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De novo assembly of haplotype-resolved genomes with trio binning.
Koren S, Rhie A, Walenz BP, Dilthey AT, Bickhart DM, Kingan SB, Hiendleder S, Williams JL, Smith TPL, Phillippy AM. Koren S, et al. Among authors: bickhart dm. Nat Biotechnol. 2018 Oct 22:10.1038/nbt.4277. doi: 10.1038/nbt.4277. Online ahead of print. Nat Biotechnol. 2018. PMID: 30346939 Free PMC article.
Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome.
Bickhart DM, Rosen BD, Koren S, Sayre BL, Hastie AR, Chan S, Lee J, Lam ET, Liachko I, Sullivan ST, Burton JN, Huson HJ, Nystrom JC, Kelley CM, Hutchison JL, Zhou Y, Sun J, Crisà A, Ponce de León FA, Schwartz JC, Hammond JA, Waldbieser GC, Schroeder SG, Liu GE, Dunham MJ, Shendure J, Sonstegard TS, Phillippy AM, Van Tassell CP, Smith TP. Bickhart DM, et al. Nat Genet. 2017 Apr;49(4):643-650. doi: 10.1038/ng.3802. Epub 2017 Mar 6. Nat Genet. 2017. PMID: 28263316 Free PMC article.
The antibody loci of the domestic goat (Capra hircus).
Schwartz JC, Philp RL, Bickhart DM, Smith TPL, Hammond JA. Schwartz JC, et al. Among authors: bickhart dm. Immunogenetics. 2018 May;70(5):317-326. doi: 10.1007/s00251-017-1033-3. Epub 2017 Oct 23. Immunogenetics. 2018. PMID: 29063126 Free PMC article.
Computational detection and experimental validation of segmental duplications and associated copy number variations in water buffalo ( Bubalus bubalis ).
Liu S, Kang X, Catacchio CR, Liu M, Fang L, Schroeder SG, Li W, Rosen BD, Iamartino D, Iannuzzi L, Sonstegard TS, Van Tassell CP, Ventura M, Low WY, Williams JL, Bickhart DM, Liu GE. Liu S, et al. Among authors: bickhart dm. Funct Integr Genomics. 2019 May;19(3):409-419. doi: 10.1007/s10142-019-00657-4. Epub 2019 Feb 7. Funct Integr Genomics. 2019. PMID: 30734132
Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation.
Bickhart DM, Watson M, Koren S, Panke-Buisse K, Cersosimo LM, Press MO, Van Tassell CP, Van Kessel JAS, Haley BJ, Kim SW, Heiner C, Suen G, Bakshy K, Liachko I, Sullivan ST, Myer PR, Ghurye J, Pop M, Weimer PJ, Phillippy AM, Smith TPL. Bickhart DM, et al. Genome Biol. 2019 Aug 2;20(1):153. doi: 10.1186/s13059-019-1760-x. Genome Biol. 2019. PMID: 31375138 Free PMC article.
97 results