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Proteomic-based stratification of intermediate-risk prostate cancer patients.
Zhong Q, Sun R, Aref AT, Noor Z, Anees A, Zhu Y, Lucas N, Poulos RC, Lyu M, Zhu T, Chen GB, Wang Y, Ding X, Rutishauser D, Rupp NJ, Rueschoff JH, Poyet C, Hermanns T, Fankhauser C, Rodríguez Martínez M, Shao W, Buljan M, Neumann JF, Beyer A, Hains PG, Reddel RR, Robinson PJ, Aebersold R, Guo T, Wild PJ. Zhong Q, et al. Among authors: beyer a. Life Sci Alliance. 2023 Dec 4;7(2):e202302146. doi: 10.26508/lsa.202302146. Print 2024 Feb. Life Sci Alliance. 2023. PMID: 38052461 Free PMC article.
Convergent network effects along the axis of gene expression during prostate cancer progression.
Charmpi K, Guo T, Zhong Q, Wagner U, Sun R, Toussaint NC, Fritz CE, Yuan C, Chen H, Rupp NJ, Christiansen A, Rutishauser D, Rüschoff JH, Fankhauser C, Saba K, Poyet C, Hermanns T, Oehl K, Moore AL, Beisel C, Calzone L, Martignetti L, Zhang Q, Zhu Y, Martínez MR, Manica M, Haffner MC, Aebersold R, Wild PJ, Beyer A. Charmpi K, et al. Among authors: beyer a. Genome Biol. 2020 Dec 14;21(1):302. doi: 10.1186/s13059-020-02188-9. Genome Biol. 2020. PMID: 33317623 Free PMC article.
Comparative analysis of mRNA and protein degradation in prostate tissues indicates high stability of proteins.
Shao W, Guo T, Toussaint NC, Xue P, Wagner U, Li L, Charmpi K, Zhu Y, Wu J, Buljan M, Sun R, Rutishauser D, Hermanns T, Fankhauser CD, Poyet C, Ljubicic J, Rupp N, Rüschoff JH, Zhong Q, Beyer A, Ji J, Collins BC, Liu Y, Rätsch G, Wild PJ, Aebersold R. Shao W, et al. Among authors: beyer a. Nat Commun. 2019 Jun 7;10(1):2524. doi: 10.1038/s41467-019-10513-5. Nat Commun. 2019. PMID: 31175306 Free PMC article.
Systematic proteome and proteostasis profiling in human Trisomy 21 fibroblast cells.
Liu Y, Borel C, Li L, Müller T, Williams EG, Germain PL, Buljan M, Sajic T, Boersema PJ, Shao W, Faini M, Testa G, Beyer A, Antonarakis SE, Aebersold R. Liu Y, et al. Among authors: beyer a. Nat Commun. 2017 Oct 31;8(1):1212. doi: 10.1038/s41467-017-01422-6. Nat Commun. 2017. PMID: 29089484 Free PMC article.
A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis.
Picotti P, Clément-Ziza M, Lam H, Campbell DS, Schmidt A, Deutsch EW, Röst H, Sun Z, Rinner O, Reiter L, Shen Q, Michaelson JJ, Frei A, Alberti S, Kusebauch U, Wollscheid B, Moritz RL, Beyer A, Aebersold R. Picotti P, et al. Among authors: beyer a. Nature. 2013 Feb 14;494(7436):266-70. doi: 10.1038/nature11835. Epub 2013 Jan 20. Nature. 2013. PMID: 23334424 Free PMC article.
Genetic effects on molecular network states explain complex traits.
Weith M, Großbach J, Clement-Ziza M, Gillet L, Rodríguez-López M, Marguerat S, Workman CT, Picotti P, Bähler J, Aebersold R, Beyer A. Weith M, et al. Among authors: beyer a. Mol Syst Biol. 2023 Aug 8;19(8):e11493. doi: 10.15252/msb.202211493. Epub 2023 Jul 24. Mol Syst Biol. 2023. PMID: 37485750 Free PMC article.
Proteomics-Based Monitoring of Pathway Activity Reveals that Blocking Diacylglycerol Biosynthesis Rescues from Alpha-Synuclein Toxicity.
Soste M, Charmpi K, Lampert F, Gerez JA, van Oostrum M, Malinovska L, Boersema PJ, Prymaczok NC, Riek R, Peter M, Vanni S, Beyer A, Picotti P. Soste M, et al. Among authors: beyer a. Cell Syst. 2019 Sep 25;9(3):309-320.e8. doi: 10.1016/j.cels.2019.07.010. Epub 2019 Sep 11. Cell Syst. 2019. PMID: 31521608 Free PMC article.
The impact of genomic variation on protein phosphorylation states and regulatory networks.
Grossbach J, Gillet L, Clément-Ziza M, Schmalohr CL, Schubert OT, Schütter M, Mawer JSP, Barnes CA, Bludau I, Weith M, Tessarz P, Graef M, Aebersold R, Beyer A. Grossbach J, et al. Among authors: beyer a. Mol Syst Biol. 2022 May;18(5):e10712. doi: 10.15252/msb.202110712. Mol Syst Biol. 2022. PMID: 35574625 Free PMC article.
729 results