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tHapMix: simulating tumour samples through haplotype mixtures.
Ivakhno S, Colombo C, Tanner S, Tedder P, Berri S, Cox AJ. Ivakhno S, et al. Among authors: berri s. Bioinformatics. 2017 Jan 15;33(2):280-282. doi: 10.1093/bioinformatics/btw589. Epub 2016 Sep 7. Bioinformatics. 2017. PMID: 27605106
A computational index derived from whole-genome copy number analysis is a novel tool for prognosis in early stage lung squamous cell carcinoma.
Belvedere O, Berri S, Chalkley R, Conway C, Barbone F, Pisa F, MacLennan K, Daly C, Alsop M, Morgan J, Menis J, Tcherveniakov P, Papagiannopoulos K, Rabbitts P, Wood HM. Belvedere O, et al. Among authors: berri s. Genomics. 2012 Jan;99(1):18-24. doi: 10.1016/j.ygeno.2011.10.006. Epub 2011 Oct 25. Genomics. 2012. PMID: 22050995 Free article.
Diagnosis of copy number variation by Illumina next generation sequencing is comparable in performance to oligonucleotide array comparative genomic hybridisation.
Hayes JL, Tzika A, Thygesen H, Berri S, Wood HM, Hewitt S, Pendlebury M, Coates A, Willoughby L, Watson CM, Rabbitts P, Roberts P, Taylor GR. Hayes JL, et al. Among authors: berri s. Genomics. 2013 Sep;102(3):174-81. doi: 10.1016/j.ygeno.2013.04.006. Epub 2013 Apr 15. Genomics. 2013. PMID: 23598253 Free article.
Next-generation sequencing for simultaneous determination of human papillomavirus load, subtype, and associated genomic copy number changes in tumors.
Conway C, Chalkley R, High A, Maclennan K, Berri S, Chengot P, Alsop M, Egan P, Morgan J, Taylor GR, Chester J, Sen M, Rabbitts P, Wood HM. Conway C, et al. Among authors: berri s. J Mol Diagn. 2012 Mar-Apr;14(2):104-11. doi: 10.1016/j.jmoldx.2011.10.003. Epub 2012 Jan 10. J Mol Diagn. 2012. PMID: 22240447 Free article.
24 results