Berninger P - Search Results

1

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP.

Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, Berninger P, Rothballer A, Ascano M Jr, Jungkamp AC, Munschauer M, Ulrich A, Wardle GS, Dewell S, Zavolan M, Tuschl T. Hafner M, et al. Among authors: berninger p. Cell. 2010 Apr 2;141(1):129-41. doi: 10.1016/j.cell.2010.03.009. Cell. 2010. PMID: 20371350 Free PMC article.

2

PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins.

Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, Berninger P, Rothballer A, Ascano M, Jungkamp AC, Munschauer M, Ulrich A, Wardle GS, Dewell S, Zavolan M, Tuschl T. Hafner M, et al. Among authors: berninger p. J Vis Exp. 2010 Jul 2;(41):2034. doi: 10.3791/2034. J Vis Exp. 2010. PMID: 20644507 Free PMC article.

3

miRNA in situ hybridization in formaldehyde and EDC-fixed tissues.

Pena JT, Sohn-Lee C, Rouhanifard SH, Ludwig J, Hafner M, Mihailovic A, Lim C, Holoch D, Berninger P, Zavolan M, Tuschl T. Pena JT, et al. Among authors: berninger p. Nat Methods. 2009 Feb;6(2):139-41. doi: 10.1038/nmeth.1294. Epub 2009 Jan 11. Nat Methods. 2009. PMID: 19137005 Free PMC article.

4

MicroRNA activity is suppressed in mouse oocytes.

Ma J, Flemr M, Stein P, Berninger P, Malik R, Zavolan M, Svoboda P, Schultz RM. Ma J, et al. Among authors: berninger p. Curr Biol. 2010 Feb 9;20(3):265-70. doi: 10.1016/j.cub.2009.12.042. Epub 2010 Jan 28. Curr Biol. 2010. PMID: 20116252 Free PMC article.

5

MirZ: an integrated microRNA expression atlas and target prediction resource.

Hausser J, Berninger P, Rodak C, Jantscher Y, Wirth S, Zavolan M. Hausser J, et al. Among authors: berninger p. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W266-72. doi: 10.1093/nar/gkp412. Epub 2009 May 25. Nucleic Acids Res. 2009. PMID: 19468042 Free PMC article.

6

Conserved generation of short products at piRNA loci.

Berninger P, Jaskiewicz L, Khorshid M, Zavolan M. Berninger P, et al. BMC Genomics. 2011 Jan 19;12:46. doi: 10.1186/1471-2164-12-46. BMC Genomics. 2011. PMID: 21247452 Free PMC article.

7

Computational analysis of small RNA cloning data.

Berninger P, Gaidatzis D, van Nimwegen E, Zavolan M. Berninger P, et al. Methods. 2008 Jan;44(1):13-21. doi: 10.1016/j.ymeth.2007.10.002. Methods. 2008. PMID: 18158128 Review.

8

A role for Fkbp6 and the chaperone machinery in piRNA amplification and transposon silencing.

Xiol J, Cora E, Koglgruber R, Chuma S, Subramanian S, Hosokawa M, Reuter M, Yang Z, Berninger P, Palencia A, Benes V, Penninger J, Sachidanandam R, Pillai RS. Xiol J, et al. Among authors: berninger p. Mol Cell. 2012 Sep 28;47(6):970-9. doi: 10.1016/j.molcel.2012.07.019. Epub 2012 Aug 16. Mol Cell. 2012. PMID: 22902560 Free article.

9

MicroRNAs control de novo DNA methylation through regulation of transcriptional repressors in mouse embryonic stem cells.

Sinkkonen L, Hugenschmidt T, Berninger P, Gaidatzis D, Mohn F, Artus-Revel CG, Zavolan M, Svoboda P, Filipowicz W. Sinkkonen L, et al. Among authors: berninger p. Nat Struct Mol Biol. 2008 Mar;15(3):259-67. doi: 10.1038/nsmb.1391. Epub 2008 Mar 2. Nat Struct Mol Biol. 2008. PMID: 18311153

10

An epigenetic profile of early T-cell development from multipotent progenitors to committed T-cell descendants.

Vigano MA, Ivanek R, Balwierz P, Berninger P, van Nimwegen E, Karjalainen K, Rolink A. Vigano MA, et al. Among authors: berninger p. Eur J Immunol. 2014 Apr;44(4):1181-93. doi: 10.1002/eji.201344022. Epub 2014 Feb 1. Eur J Immunol. 2014. PMID: 24374622 Free article.

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