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A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses.
Hakimzadeh A, Abdala Asbun A, Albanese D, Bernard M, Buchner D, Callahan B, Caporaso JG, Curd E, Djemiel C, Brandström Durling M, Elbrecht V, Gold Z, Gweon HS, Hajibabaei M, Hildebrand F, Mikryukov V, Normandeau E, Özkurt E, M Palmer J, Pascal G, Porter TM, Straub D, Vasar M, Větrovský T, Zafeiropoulos H, Anslan S. Hakimzadeh A, et al. Among authors: bernard m, m palmer j. Mol Ecol Resour. 2023 Aug 7:10.1111/1755-0998.13847. doi: 10.1111/1755-0998.13847. Online ahead of print. Mol Ecol Resour. 2023. PMID: 37548515
FROGS: Find, Rapidly, OTUs with Galaxy Solution.
Escudié F, Auer L, Bernard M, Mariadassou M, Cauquil L, Vidal K, Maman S, Hernandez-Raquet G, Combes S, Pascal G. Escudié F, et al. Among authors: bernard m. Bioinformatics. 2018 Apr 15;34(8):1287-1294. doi: 10.1093/bioinformatics/btx791. Bioinformatics. 2018. PMID: 29228191
16S rRNA Amplicon Sequencing for Epidemiological Surveys of Bacteria in Wildlife.
Galan M, Razzauti M, Bard E, Bernard M, Brouat C, Charbonnel N, Dehne-Garcia A, Loiseau A, Tatard C, Tamisier L, Vayssier-Taussat M, Vignes H, Cosson JF. Galan M, et al. Among authors: bernard m. mSystems. 2016 Jul 19;1(4):e00032-16. doi: 10.1128/mSystems.00032-16. eCollection 2016 Jul-Aug. mSystems. 2016. PMID: 27822541 Free PMC article.
RNA-Seq Data for Reliable SNP Detection and Genotype Calling: Interest for Coding Variant Characterization and Cis-Regulation Analysis by Allele-Specific Expression in Livestock Species.
Jehl F, Degalez F, Bernard M, Lecerf F, Lagoutte L, Désert C, Coulée M, Bouchez O, Leroux S, Abasht B, Tixier-Boichard M, Bed'hom B, Burlot T, Gourichon D, Bardou P, Acloque H, Foissac S, Djebali S, Giuffra E, Zerjal T, Pitel F, Klopp C, Lagarrigue S. Jehl F, et al. Among authors: bernard m. Front Genet. 2021 Jun 28;12:655707. doi: 10.3389/fgene.2021.655707. eCollection 2021. Front Genet. 2021. PMID: 34262593 Free PMC article.
1,591 results