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CoRC: the COPASI R Connector.
Förster J, Bergmann FT, Pahle J. Förster J, et al. Among authors: bergmann ft. Bioinformatics. 2021 Sep 9;37(17):2778-2779. doi: 10.1093/bioinformatics/btab033. Bioinformatics. 2021. PMID: 33470404
SBtab: a flexible table format for data exchange in systems biology.
Lubitz T, Hahn J, Bergmann FT, Noor E, Klipp E, Liebermeister W. Lubitz T, et al. Among authors: bergmann ft. Bioinformatics. 2016 Aug 15;32(16):2559-61. doi: 10.1093/bioinformatics/btw179. Epub 2016 Apr 8. Bioinformatics. 2016. PMID: 27153616 Free PMC article.
COPASI and its applications in biotechnology.
Bergmann FT, Hoops S, Klahn B, Kummer U, Mendes P, Pahle J, Sahle S. Bergmann FT, et al. J Biotechnol. 2017 Nov 10;261:215-220. doi: 10.1016/j.jbiotec.2017.06.1200. Epub 2017 Jun 24. J Biotechnol. 2017. PMID: 28655634 Free PMC article. Review.
SBML Level 3 Package: Flux Balance Constraints version 2.
Olivier BG, Bergmann FT. Olivier BG, et al. Among authors: bergmann ft. J Integr Bioinform. 2018 Mar 9;15(1):20170082. doi: 10.1515/jib-2017-0082. J Integr Bioinform. 2018. PMID: 29522419 Free PMC article.
SBML Level 3 package: Render, Version 1, Release 1.
Bergmann FT, Keating SM, Gauges R, Sahle S, Wengler K. Bergmann FT, et al. J Integr Bioinform. 2018 Apr 2;15(1):20170078. doi: 10.1515/jib-2017-0078. J Integr Bioinform. 2018. PMID: 29605822 Free PMC article.
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