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Genome Sequence of the Attenuated Carbosap Vaccine Strain of Bacillus anthracis.
Harrington R, Ondov BD, Radune D, Friss MB, Klubnik J, Diviak L, Hnath J, Cendrowski SR, Blank TE, Karaolis D, Friedlander AM, Burans JP, Rosovitz MJ, Treangen T, Phillippy AM, Bergman NH. Harrington R, et al. Among authors: bergman nh. Genome Announc. 2013 Jan;1(1):e00067-12. doi: 10.1128/genomeA.00067-12. Epub 2013 Jan 15. Genome Announc. 2013. PMID: 23405332 Free PMC article.
Draft Genome Sequences from a Novel Clade of Bacillus cereus Sensu Lato Strains, Isolated from the International Space Station.
Venkateswaran K, Checinska Sielaff A, Ratnayake S, Pope RK, Blank TE, Stepanov VG, Fox GE, van Tongeren SP, Torres C, Allen J, Jaing C, Pierson D, Perry J, Koren S, Phillippy A, Klubnik J, Treangen TJ, Rosovitz MJ, Bergman NH. Venkateswaran K, et al. Among authors: bergman nh. Genome Announc. 2017 Aug 10;5(32):e00680-17. doi: 10.1128/genomeA.00680-17. Genome Announc. 2017. PMID: 28798168 Free PMC article.
Draft Genome Sequences of Five Historical Bacillus anthracis Strains.
Sommer DD, Ratnayake S, Radune D, Parker K, Enke S, Ferguson TM, Lovett M, Mallonee A, Rae Z, Rosovitz MJ, Diviak LF, Friss MB, Klubnik JP, Fronda KH, Horn GP, Blank TE, Pope RK, Hanna PC, Bergman NH, Bazinet AL. Sommer DD, et al. Among authors: bergman nh. Microbiol Resour Announc. 2020 Jan 2;9(1):e01130-19. doi: 10.1128/MRA.01130-19. Microbiol Resour Announc. 2020. PMID: 31896628 Free PMC article.
Mash: fast genome and metagenome distance estimation using MinHash.
Ondov BD, Treangen TJ, Melsted P, Mallonee AB, Bergman NH, Koren S, Phillippy AM. Ondov BD, et al. Among authors: bergman nh. Genome Biol. 2016 Jun 20;17(1):132. doi: 10.1186/s13059-016-0997-x. Genome Biol. 2016. PMID: 27323842 Free PMC article.
Interactive metagenomic visualization in a Web browser.
Ondov BD, Bergman NH, Phillippy AM. Ondov BD, et al. Among authors: bergman nh. BMC Bioinformatics. 2011 Sep 30;12:385. doi: 10.1186/1471-2105-12-385. BMC Bioinformatics. 2011. PMID: 21961884 Free PMC article.
Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018.
Meisel JS, Nasko DJ, Brubach B, Cepeda-Espinoza V, Chopyk J, Corrada-Bravo H, Fedarko M, Ghurye J, Javkar K, Olson ND, Shah N, Allard SM, Bazinet AL, Bergman NH, Brown A, Caporaso JG, Conlan S, DiRuggiero J, Forry SP, Hasan NA, Kralj J, Luethy PM, Milton DK, Ondov BD, Preheim S, Ratnayake S, Rogers SM, Rosovitz MJ, Sakowski EG, Schliebs NO, Sommer DD, Ternus KL, Uritskiy G, Zhang SX, Pop M, Treangen TJ. Meisel JS, et al. Among authors: bergman nh. Microbiome. 2018 Nov 5;6(1):197. doi: 10.1186/s40168-018-0582-5. Microbiome. 2018. PMID: 30396371 Free PMC article.
48 results