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Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations.
Chen Q, Allot A, Leaman R, Islamaj R, Du J, Fang L, Wang K, Xu S, Zhang Y, Bagherzadeh P, Bergler S, Bhatnagar A, Bhavsar N, Chang YC, Lin SJ, Tang W, Zhang H, Tavchioski I, Pollak S, Tian S, Zhang J, Otmakhova Y, Yepes AJ, Dong H, Wu H, Dufour R, Labrak Y, Chatterjee N, Tandon K, Laleye FAA, Rakotoson L, Chersoni E, Gu J, Friedrich A, Pujari SC, Chizhikova M, Sivadasan N, Vg S, Lu Z. Chen Q, et al. Among authors: bergler s. Database (Oxford). 2022 Aug 31;2022:baac069. doi: 10.1093/database/baac069. Database (Oxford). 2022. PMID: 36043400 Free PMC article.
Automatic Extraction of Medication Mentions from Tweets-Overview of the BioCreative VII Shared Task 3 Competition.
Weissenbacher D, O'Connor K, Rawal S, Zhang Y, Tsai RT, Miller T, Xu D, Anderson C, Liu B, Han Q, Zhang J, Kulev I, Köprü B, Rodriguez-Esteban R, Ozkirimli E, Ayach A, Roller R, Piccolo S, Han P, Vydiswaran VGV, Tekumalla R, Banda JM, Bagherzadeh P, Bergler S, Silva JF, Almeida T, Martinez P, Rivera-Zavala R, Wang CK, Dai HJ, Alberto Robles Hernandez L, Gonzalez-Hernandez G. Weissenbacher D, et al. Among authors: bergler s. Database (Oxford). 2023 Feb 3;2023:baac108. doi: 10.1093/database/baac108. Database (Oxford). 2023. PMID: 36734300 Free PMC article.
U-Compare bio-event meta-service: compatible BioNLP event extraction services.
Kano Y, Björne J, Ginter F, Salakoski T, Buyko E, Hahn U, Cohen KB, Verspoor K, Roeder C, Hunter LE, Kilicoglu H, Bergler S, Van Landeghem S, Van Parys T, Van de Peer Y, Miwa M, Ananiadou S, Neves M, Pascual-Montano A, Özgür A, Radev DR, Riedel S, Sætre R, Chun HW, Kim JD, Pyysalo S, Ohta T, Tsujii J. Kano Y, et al. Among authors: bergler s. BMC Bioinformatics. 2011 Dec 18;12:481. doi: 10.1186/1471-2105-12-481. BMC Bioinformatics. 2011. PMID: 22177292 Free PMC article.
Biological event composition.
Kilicoglu H, Bergler S. Kilicoglu H, et al. Among authors: bergler s. BMC Bioinformatics. 2012 Jun 26;13 Suppl 11(Suppl 11):S7. doi: 10.1186/1471-2105-13-S11-S7. BMC Bioinformatics. 2012. PMID: 22759461 Free PMC article.
A New CYP2E1 Inhibitor, 12-Imidazolyl-1-dodecanol, Represents a Potential Treatment for Hepatocellular Carcinoma.
Diesinger T, Lautwein A, Bergler S, Buckert D, Renz C, Dvorsky R, Buko V, Kirko S, Schneider E, Kuchenbauer F, Kumar M, Günes C, Genze F, Büchele B, Simmet T, Haslbeck M, Masur K, Barth T, Müller-Enoch D, Wirth T, Haehner T. Diesinger T, et al. Among authors: bergler s. Can J Gastroenterol Hepatol. 2021 Feb 2;2021:8854432. doi: 10.1155/2021/8854432. eCollection 2021. Can J Gastroenterol Hepatol. 2021. PMID: 33604316 Free PMC article.
Drug targeting CYP2E1 for the treatment of early-stage alcoholic steatohepatitis.
Diesinger T, Buko V, Lautwein A, Dvorsky R, Belonovskaya E, Lukivskaya O, Naruta E, Kirko S, Andreev V, Buckert D, Bergler S, Renz C, Schneider E, Kuchenbauer F, Kumar M, Günes C, Büchele B, Simmet T, Müller-Enoch D, Wirth T, Haehner T. Diesinger T, et al. Among authors: bergler s. PLoS One. 2020 Jul 23;15(7):e0235990. doi: 10.1371/journal.pone.0235990. eCollection 2020. PLoS One. 2020. PMID: 32701948 Free PMC article.