Berger B - Search Results

1

Widespread macromolecular interaction perturbations in human genetic disorders.

Sahni N, Yi S, Taipale M, Fuxman Bass JI, Coulombe-Huntington J, Yang F, Peng J, Weile J, Karras GI, Wang Y, Kovács IA, Kamburov A, Krykbaeva I, Lam MH, Tucker G, Khurana V, Sharma A, Liu YY, Yachie N, Zhong Q, Shen Y, Palagi A, San-Miguel A, Fan C, Balcha D, Dricot A, Jordan DM, Walsh JM, Shah AA, Yang X, Stoyanova AK, Leighton A, Calderwood MA, Jacob Y, Cusick ME, Salehi-Ashtiani K, Whitesell LJ, Sunyaev S, Berger B, Barabási AL, Charloteaux B, Hill DE, Hao T, Roth FP, Xia Y, Walhout AJM, Lindquist S, Vidal M. Sahni N, et al. Among authors: berger b. Cell. 2015 Apr 23;161(3):647-660. doi: 10.1016/j.cell.2015.04.013. Cell. 2015. PMID: 25910212 Free PMC article.

2

BETASCAN: probable beta-amyloids identified by pairwise probabilistic analysis.

Bryan AW Jr, Menke M, Cowen LJ, Lindquist SL, Berger B. Bryan AW Jr, et al. Among authors: berger b. PLoS Comput Biol. 2009 Mar;5(3):e1000333. doi: 10.1371/journal.pcbi.1000333. Epub 2009 Mar 27. PLoS Comput Biol. 2009. PMID: 19325876 Free PMC article.

3

A method for probing the mutational landscape of amyloid structure.

O'Donnell CW, Waldispühl J, Lis M, Halfmann R, Devadas S, Lindquist S, Berger B. O'Donnell CW, et al. Among authors: berger b. Bioinformatics. 2011 Jul 1;27(13):i34-42. doi: 10.1093/bioinformatics/btr238. Bioinformatics. 2011. PMID: 21685090 Free PMC article.

4

Opposing effects of glutamine and asparagine govern prion formation by intrinsically disordered proteins.

Halfmann R, Alberti S, Krishnan R, Lyle N, O'Donnell CW, King OD, Berger B, Pappu RV, Lindquist S. Halfmann R, et al. Among authors: berger b. Mol Cell. 2011 Jul 8;43(1):72-84. doi: 10.1016/j.molcel.2011.05.013. Mol Cell. 2011. PMID: 21726811 Free PMC article.

5

Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling.

Friedman AA, Tucker G, Singh R, Yan D, Vinayagam A, Hu Y, Binari R, Hong P, Sun X, Porto M, Pacifico S, Murali T, Finley RL Jr, Asara JM, Berger B, Perrimon N. Friedman AA, et al. Among authors: berger b. Sci Signal. 2011 Oct 25;4(196):rs10. doi: 10.1126/scisignal.2002029. Sci Signal. 2011. PMID: 22028469 Free PMC article.

6

Phenotype prediction using regularized regression on genetic data in the DREAM5 Systems Genetics B Challenge.

Loh PR, Tucker G, Berger B. Loh PR, et al. Among authors: berger b. PLoS One. 2011;6(12):e29095. doi: 10.1371/journal.pone.0029095. Epub 2011 Dec 28. PLoS One. 2011. PMID: 22216175 Free PMC article.

7

Computational solutions for omics data.

Berger B, Peng J, Singh M. Berger B, et al. Nat Rev Genet. 2013 May;14(5):333-46. doi: 10.1038/nrg3433. Nat Rev Genet. 2013. PMID: 23594911 Free PMC article. Review.

8

A sampling framework for incorporating quantitative mass spectrometry data in protein interaction analysis.

Tucker G, Loh PR, Berger B. Tucker G, et al. Among authors: berger b. BMC Bioinformatics. 2013 Oct 4;14:299. doi: 10.1186/1471-2105-14-299. BMC Bioinformatics. 2013. PMID: 24093595 Free PMC article.

9

HapTree: a novel Bayesian framework for single individual polyplotyping using NGS data.

Berger E, Yorukoglu D, Peng J, Berger B. Berger E, et al. Among authors: berger b. PLoS Comput Biol. 2014 Mar 27;10(3):e1003502. doi: 10.1371/journal.pcbi.1003502. eCollection 2014 Mar. PLoS Comput Biol. 2014. PMID: 24675685 Free PMC article.

10

Improving the power of GWAS and avoiding confounding from population stratification with PC-Select.

Tucker G, Price AL, Berger B. Tucker G, et al. Among authors: berger b. Genetics. 2014 Jul;197(3):1045-9. doi: 10.1534/genetics.114.164285. Epub 2014 Apr 29. Genetics. 2014. PMID: 24788602 Free PMC article.

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