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Integration of Metabolomic and Other Omics Data in Population-Based Study Designs: An Epidemiological Perspective.
Chu SH, Huang M, Kelly RS, Benedetti E, Siddiqui JK, Zeleznik OA, Pereira A, Herrington D, Wheelock CE, Krumsiek J, McGeachie M, Moore SC, Kraft P, Mathé E, Lasky-Su J; Consortium of Metabolomics Studies Statistics Working Group. Chu SH, et al. Among authors: benedetti e. Metabolites. 2019 Jun 18;9(6):117. doi: 10.3390/metabo9060117. Metabolites. 2019. PMID: 31216675 Free PMC article. Review.
A strategy to incorporate prior knowledge into correlation network cutoff selection.
Benedetti E, Pučić-Baković M, Keser T, Gerstner N, Büyüközkan M, Štambuk T, Selman MHJ, Rudan I, Polašek O, Hayward C, Al-Amin H, Suhre K, Kastenmüller G, Lauc G, Krumsiek J. Benedetti E, et al. Nat Commun. 2020 Oct 14;11(1):5153. doi: 10.1038/s41467-020-18675-3. Nat Commun. 2020. PMID: 33056991 Free PMC article.
maplet: an extensible R toolbox for modular and reproducible metabolomics pipelines.
Chetnik K, Benedetti E, Gomari DP, Schweickart A, Batra R, Buyukozkan M, Wang Z, Arnold M, Zierer J, Suhre K, Krumsiek J. Chetnik K, et al. Among authors: benedetti e. Bioinformatics. 2022 Jan 27;38(4):1168-1170. doi: 10.1093/bioinformatics/btab741. Bioinformatics. 2022. PMID: 34694386 Free PMC article.
Angiopoietin 2 Is Associated with Vascular Necroptosis Induction in Coronavirus Disease 2019 Acute Respiratory Distress Syndrome.
Price DR, Benedetti E, Hoffman KL, Gomez-Escobar L, Alvarez-Mulett S, Capili A, Sarwath H, Parkhurst CN, Lafond E, Weidman K, Ravishankar A, Cheong JG, Batra R, Büyüközkan M, Chetnik K, Easthausen I, Schenck EJ, Racanelli AC, Outtz Reed H, Laurence J, Josefowicz SZ, Lief L, Choi ME, Schmidt F, Borczuk AC, Choi AMK, Krumsiek J, Rafii S. Price DR, et al. Among authors: benedetti e. Am J Pathol. 2022 Jul;192(7):1001-1015. doi: 10.1016/j.ajpath.2022.04.002. Epub 2022 Apr 22. Am J Pathol. 2022. PMID: 35469796 Free PMC article.
Mitonuclear genotype remodels the metabolic and microenvironmental landscape of Hürthle cell carcinoma.
Ganly I, Liu EM, Kuo F, Makarov V, Dong Y, Park J, Gong Y, Gorelick AN, Knauf JA, Benedetti E, Tait-Mulder J, Morris LGT, Fagin JA, Intlekofer AM, Krumsiek J, Gammage PA, Ghossein R, Xu B, Chan TA, Reznik E. Ganly I, et al. Among authors: benedetti e. Sci Adv. 2022 Jun 24;8(25):eabn9699. doi: 10.1126/sciadv.abn9699. Epub 2022 Jun 22. Sci Adv. 2022. PMID: 35731870 Free PMC article.
Integrative metabolomic and proteomic signatures define clinical outcomes in severe COVID-19.
Buyukozkan M, Alvarez-Mulett S, Racanelli AC, Schmidt F, Batra R, Hoffman KL, Sarwath H, Engelke R, Gomez-Escobar L, Simmons W, Benedetti E, Chetnik K, Zhang G, Schenck E, Suhre K, Choi JJ, Zhao Z, Racine-Brzostek S, Yang HS, Choi ME, Choi AMK, Cho SJ, Krumsiek J. Buyukozkan M, et al. Among authors: benedetti e. iScience. 2022 Jul 15;25(7):104612. doi: 10.1016/j.isci.2022.104612. Epub 2022 Jun 17. iScience. 2022. PMID: 35756895 Free PMC article.
Multi-omic comparative analysis of COVID-19 and bacterial sepsis-induced ARDS.
Batra R, Whalen W, Alvarez-Mulett S, Gómez-Escobar LG, Hoffman KL, Simmons W, Harrington J, Chetnik K, Buyukozkan M, Benedetti E, Choi ME, Suhre K, Schenck E, Choi AMK, Schmidt F, Cho SJ, Krumsiek J. Batra R, et al. Among authors: benedetti e. medRxiv [Preprint]. 2022 Aug 13:2022.05.16.22274587. doi: 10.1101/2022.05.16.22274587. medRxiv. 2022. PMID: 35982655 Free PMC article. Updated. Preprint.
980 results