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A framework to assess the quality and impact of bioinformatics training across ELIXIR.
Gurwitz KT, Singh Gaur P, Bellis LJ, Larcombe L, Alloza E, Balint BL, Botzki A, Dimec J, Dominguez Del Angel V, Fernandes PL, Korpelainen E, Krause R, Kuzak M, Le Pera L, Leskošek B, Lindvall JM, Marek D, Martinez PA, Muyldermans T, Nygård S, Palagi PM, Peterson H, Psomopoulos F, Spiwok V, van Gelder CWG, Via A, Vidak M, Wibberg D, Morgan SL, Rustici G. Gurwitz KT, et al. Among authors: bellis lj. PLoS Comput Biol. 2020 Jul 23;16(7):e1007976. doi: 10.1371/journal.pcbi.1007976. eCollection 2020 Jul. PLoS Comput Biol. 2020. PMID: 32702016 Free PMC article.
Training bioinformaticians in High Performance Computing.
Pérez-Wohlfeil E, Torreno O, Bellis LJ, Fernandes PL, Leskosek B, Trelles O. Pérez-Wohlfeil E, et al. Among authors: bellis lj. Heliyon. 2018 Dec 17;4(12):e01057. doi: 10.1016/j.heliyon.2018.e01057. eCollection 2018 Dec. Heliyon. 2018. PMID: 30582061 Free PMC article.
ELIXIR-UK role in bioinformatics training at the national level and across ELIXIR.
Larcombe L, Hendricusdottir R, Attwood TK, Bacall F, Beard N, Bellis LJ, Dunn WB, Hancock JM, Nenadic A, Orengo C, Overduin B, Sansone SA, Thurston M, Viant MR, Winder CL, Goble CA, Ponting CP, Rustici G. Larcombe L, et al. Among authors: bellis lj. F1000Res. 2017 Jun 21;6:ELIXIR-952. doi: 10.12688/f1000research.11837.1. eCollection 2017. F1000Res. 2017. PMID: 28781748 Free PMC article.
Ten simple rules for measuring the impact of workshops.
Sufi S, Nenadic A, Silva R, Duckles B, Simera I, de Beyer JA, Struthers C, Nurmikko-Fuller T, Bellis L, Miah W, Wilde A, Emsley I, Philippe O, Balzano M, Coelho S, Ford H, Jones C, Higgins V. Sufi S, et al. PLoS Comput Biol. 2018 Aug 30;14(8):e1006191. doi: 10.1371/journal.pcbi.1006191. eCollection 2018 Aug. PLoS Comput Biol. 2018. PMID: 30161124 Free PMC article.
Chemical databases: curation or integration by user-defined equivalence?
Hersey A, Chambers J, Bellis L, Patrícia Bento A, Gaulton A, Overington JP. Hersey A, et al. Drug Discov Today Technol. 2015 Jul;14:17-24. doi: 10.1016/j.ddtec.2015.01.005. Epub 2015 Mar 11. Drug Discov Today Technol. 2015. PMID: 26194583 Free PMC article. Review.
ChEMBL: a large-scale bioactivity database for drug discovery.
Gaulton A, Bellis LJ, Bento AP, Chambers J, Davies M, Hersey A, Light Y, McGlinchey S, Michalovich D, Al-Lazikani B, Overington JP. Gaulton A, et al. Among authors: bellis lj. Nucleic Acids Res. 2012 Jan;40(Database issue):D1100-7. doi: 10.1093/nar/gkr777. Epub 2011 Sep 23. Nucleic Acids Res. 2012. PMID: 21948594 Free PMC article.
The ChEMBL database in 2017.
Gaulton A, Hersey A, Nowotka M, Bento AP, Chambers J, Mendez D, Mutowo P, Atkinson F, Bellis LJ, Cibrián-Uhalte E, Davies M, Dedman N, Karlsson A, Magariños MP, Overington JP, Papadatos G, Smit I, Leach AR. Gaulton A, et al. Among authors: bellis lj. Nucleic Acids Res. 2017 Jan 4;45(D1):D945-D954. doi: 10.1093/nar/gkw1074. Epub 2016 Nov 28. Nucleic Acids Res. 2017. PMID: 27899562 Free PMC article.
Collation and data-mining of literature bioactivity data for drug discovery.
Bellis LJ, Akhtar R, Al-Lazikani B, Atkinson F, Bento AP, Chambers J, Davies M, Gaulton A, Hersey A, Ikeda K, Krüger FA, Light Y, McGlinchey S, Santos R, Stauch B, Overington JP. Bellis LJ, et al. Biochem Soc Trans. 2011 Oct;39(5):1365-70. doi: 10.1042/BST0391365. Biochem Soc Trans. 2011. PMID: 21936816
Estimating error rates in bioactivity databases.
Tiikkainen P, Bellis L, Light Y, Franke L. Tiikkainen P, et al. J Chem Inf Model. 2013 Oct 28;53(10):2499-505. doi: 10.1021/ci400099q. Epub 2013 Oct 2. J Chem Inf Model. 2013. PMID: 24160896
14 results