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Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data.
Nadeau SA, Vaughan TG, Beckmann C, Topolsky I, Chen C, Hodcroft E, Schär T, Nissen I, Santacroce N, Burcklen E, Ferreira P, Jablonski KP, Posada-Céspedes S, Capece V, Seidel S, Santamaria de Souza N, Martinez-Gomez JM, Cheng P, Bosshard PP, Levesque MP, Kufner V, Schmutz S, Zaheri M, Huber M, Trkola A, Cordey S, Laubscher F, Gonçalves AR, Aeby S, Pillonel T, Jacot D, Bertelli C, Greub G, Leuzinger K, Stange M, Mari A, Roloff T, Seth-Smith H, Hirsch HH, Egli A, Redondo M, Kobel O, Noppen C, du Plessis L, Beerenwinkel N, Neher RA, Beisel C, Stadler T. Nadeau SA, et al. Among authors: beerenwinkel n. Sci Transl Med. 2023 Jan 25;15(680):eabn7979. doi: 10.1126/scitranslmed.abn7979. Epub 2023 Jan 25. Sci Transl Med. 2023. PMID: 36346321 Free PMC article.
Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations.
Giallonardo FD, Töpfer A, Rey M, Prabhakaran S, Duport Y, Leemann C, Schmutz S, Campbell NK, Joos B, Lecca MR, Patrignani A, Däumer M, Beisel C, Rusert P, Trkola A, Günthard HF, Roth V, Beerenwinkel N, Metzner KJ. Giallonardo FD, et al. Among authors: beerenwinkel n. Nucleic Acids Res. 2014 Aug;42(14):e115. doi: 10.1093/nar/gku537. Epub 2014 Jun 27. Nucleic Acids Res. 2014. PMID: 24972832 Free PMC article.
Perturbing resistance: a network perspective.
Levesque MP, Dummer R, Beerenwinkel N. Levesque MP, et al. Among authors: beerenwinkel n. Pigment Cell Melanoma Res. 2016 Jan;29(1):5-7. doi: 10.1111/pcmr.12431. Pigment Cell Melanoma Res. 2016. PMID: 26471867 No abstract available.
A Comprehensive Analysis of Primer IDs to Study Heterogeneous HIV-1 Populations.
Seifert D, Di Giallonardo F, Töpfer A, Singer J, Schmutz S, Günthard HF, Beerenwinkel N, Metzner KJ. Seifert D, et al. Among authors: beerenwinkel n. J Mol Biol. 2016 Jan 16;428(1):238-250. doi: 10.1016/j.jmb.2015.12.012. Epub 2015 Dec 19. J Mol Biol. 2016. PMID: 26711506 Free article.
NGS-pipe: a flexible, easily extendable and highly configurable framework for NGS analysis.
Singer J, Ruscheweyh HJ, Hofmann AL, Thurnherr T, Singer F, Toussaint NC, Ng CKY, Piscuoglio S, Beisel C, Christofori G, Dummer R, Hall MN, Krek W, Levesque MP, Manz MG, Moch H, Papassotiropoulos A, Stekhoven DJ, Wild P, Wüst T, Rinn B, Beerenwinkel N. Singer J, et al. Among authors: beerenwinkel n. Bioinformatics. 2018 Jan 1;34(1):107-108. doi: 10.1093/bioinformatics/btx540. Bioinformatics. 2018. PMID: 28968639 Free PMC article.
234 results