Beerenwinkel N - Search Results

1

What are the keys to succeeding as a computational biologist in today's research climate?

Berger B, Tian D, Li WV, El-Kebir M, Tomescu AI, Singh R, Beerenwinkel N, Li Y, Boucher C, Bar-Joseph Z. Berger B, et al. Among authors: beerenwinkel n. Cell Syst. 2022 Oct 19;13(10):781-785. doi: 10.1016/j.cels.2022.09.005. Cell Syst. 2022. PMID: 36265464 Free article. No abstract available.

2

Principles of Systems Biology, No. 31.

Cho H, Berger B, Peng J, Galitzine C, Vitek O, Beltran PMJ, Cristea IM, Görtler F, Solbrig S, Wettig T, Oefner PJ, Spang R, Altenbuchinger M, Basso RS, Hochbaum D, Vandin F, Silverbush D, Cristea S, Yanovich G, Geiger T, Beerenwinkel N, Sharan R, Zhou Z, Luhmann N, Alikhan NF, Achtman M. Cho H, et al. Among authors: beerenwinkel n. Cell Syst. 2018 Aug 22;7(2):133-135. doi: 10.1016/j.cels.2018.08.005. Cell Syst. 2018. PMID: 30138580 Free article.

3

Simultaneous Integration of Multi-omics Data Improves the Identification of Cancer Driver Modules.

Silverbush D, Cristea S, Yanovich-Arad G, Geiger T, Beerenwinkel N, Sharan R. Silverbush D, et al. Among authors: beerenwinkel n. Cell Syst. 2019 May 22;8(5):456-466.e5. doi: 10.1016/j.cels.2019.04.005. Epub 2019 May 15. Cell Syst. 2019. PMID: 31103572 Free article.

4

pathTiMEx: Joint Inference of Mutually Exclusive Cancer Pathways and Their Progression Dynamics.

Cristea S, Kuipers J, Beerenwinkel N. Cristea S, et al. Among authors: beerenwinkel n. J Comput Biol. 2017 Jun;24(6):603-615. doi: 10.1089/cmb.2016.0171. Epub 2016 Dec 12. J Comput Biol. 2017. PMID: 27936934

5

Clonal evolution driven by superdriver mutations.

Grossmann P, Cristea S, Beerenwinkel N. Grossmann P, et al. Among authors: beerenwinkel n. BMC Evol Biol. 2020 Jul 20;20(1):89. doi: 10.1186/s12862-020-01647-y. BMC Evol Biol. 2020. PMID: 32689942 Free PMC article.

6

Recurring Amplification at 11q22.1-q22.2 Locus Plays an Important Role in Lymph Node Metastasis and Radioresistance in OSCC.

Bhosale PG, Pandey M, Cristea S, Shah M, Patil A, Beerenwinkel N, Schäffer AA, Mahimkar MB. Bhosale PG, et al. Among authors: beerenwinkel n. Sci Rep. 2017 Nov 22;7(1):16051. doi: 10.1038/s41598-017-16247-y. Sci Rep. 2017. PMID: 29167558 Free PMC article.

7

Exact likelihood computation in Boolean networks with probabilistic time delays, and its application in signal network reconstruction.

Dümcke S, Bräuer J, Anchang B, Spang R, Beerenwinkel N, Tresch A. Dümcke S, et al. Among authors: beerenwinkel n. Bioinformatics. 2014 Feb 1;30(3):414-9. doi: 10.1093/bioinformatics/btt696. Epub 2013 Nov 30. Bioinformatics. 2014. PMID: 24292937

8

Chromosomal Alterations and Gene Expression Changes Associated with the Progression of Leukoplakia to Advanced Gingivobuccal Cancer.

Bhosale PG, Cristea S, Ambatipudi S, Desai RS, Kumar R, Patil A, Kane S, Borges AM, Schäffer AA, Beerenwinkel N, Mahimkar MB. Bhosale PG, et al. Among authors: beerenwinkel n. Transl Oncol. 2017 Jun;10(3):396-409. doi: 10.1016/j.tranon.2017.03.008. Epub 2017 Apr 21. Transl Oncol. 2017. PMID: 28433800 Free PMC article.

9

Tree inference for single-cell data.

Jahn K, Kuipers J, Beerenwinkel N. Jahn K, et al. Among authors: beerenwinkel n. Genome Biol. 2016 May 5;17:86. doi: 10.1186/s13059-016-0936-x. Genome Biol. 2016. PMID: 27149953 Free PMC article.

10

Detailed simulation of cancer exome sequencing data reveals differences and common limitations of variant callers.

Hofmann AL, Behr J, Singer J, Kuipers J, Beisel C, Schraml P, Moch H, Beerenwinkel N. Hofmann AL, et al. Among authors: beerenwinkel n. BMC Bioinformatics. 2017 Jan 3;18(1):8. doi: 10.1186/s12859-016-1417-7. BMC Bioinformatics. 2017. PMID: 28049408 Free PMC article.

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