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Presenting and sharing clinical data using the eTRIKS Standards Master Tree for tranSMART.
Barbosa-Silva A, Bratfalean D, Gu W, Satagopam V, Houston P, Becnel LB, Eifes S, Richard F, Tielmann A, Herzinger S, Rege K, Balling R, Peeters P, Schneider R. Barbosa-Silva A, et al. Among authors: becnel lb. Bioinformatics. 2019 May 1;35(9):1562-1565. doi: 10.1093/bioinformatics/bty809. Bioinformatics. 2019. PMID: 30256906 Free PMC article.
Sharing and reuse of individual participant data from clinical trials: principles and recommendations.
Ohmann C, Banzi R, Canham S, Battaglia S, Matei M, Ariyo C, Becnel L, Bierer B, Bowers S, Clivio L, Dias M, Druml C, Faure H, Fenner M, Galvez J, Ghersi D, Gluud C, Groves T, Houston P, Karam G, Kalra D, Knowles RL, Krleža-Jerić K, Kubiak C, Kuchinke W, Kush R, Lukkarinen A, Marques PS, Newbigging A, O'Callaghan J, Ravaud P, Schlünder I, Shanahan D, Sitter H, Spalding D, Tudur-Smith C, van Reusel P, van Veen EB, Visser GR, Wilson J, Demotes-Mainard J. Ohmann C, et al. BMJ Open. 2017 Dec 14;7(12):e018647. doi: 10.1136/bmjopen-2017-018647. BMJ Open. 2017. PMID: 29247106 Free PMC article.
Acquire: an open-source comprehensive cancer biobanking system.
Dowst H, Pew B, Watkins C, McOwiti A, Barney J, Qu S, Becnel LB. Dowst H, et al. Among authors: becnel lb. Bioinformatics. 2015 May 15;31(10):1655-62. doi: 10.1093/bioinformatics/btv012. Epub 2015 Jan 7. Bioinformatics. 2015. PMID: 25573920 Free PMC article.
Global Standards to Expedite Learning From Medical Research Data.
Hudson LD, Kush RD, Navarro Almario E, Seigneuret N, Jackson T, Jauregui B, Jordan D, Fitzmartin R, Zhou FL, Malone JK, Galvez J, Becnel LB. Hudson LD, et al. Among authors: becnel lb. Clin Transl Sci. 2018 Jul;11(4):342-344. doi: 10.1111/cts.12556. Epub 2018 Apr 26. Clin Transl Sci. 2018. PMID: 29697200 Free PMC article. No abstract available.
FAIR data sharing: The roles of common data elements and harmonization.
Kush RD, Warzel D, Kush MA, Sherman A, Navarro EA, Fitzmartin R, Pétavy F, Galvez J, Becnel LB, Zhou FL, Harmon N, Jauregui B, Jackson T, Hudson L. Kush RD, et al. Among authors: becnel lb. J Biomed Inform. 2020 Jul;107:103421. doi: 10.1016/j.jbi.2020.103421. Epub 2020 May 12. J Biomed Inform. 2020. PMID: 32407878 Free article.
Research resource: the Endometrium Database Resource (EDR).
Darlington Y, Jeong JW, Lee KY, Franco HL, Chen ES, McOwiti A, Mistretta TA, Steffen D, Becnel L, DeMayo FJ. Darlington Y, et al. Mol Endocrinol. 2013 Mar;27(3):548-54. doi: 10.1210/me.2012-1250. Epub 2013 Jan 22. Mol Endocrinol. 2013. PMID: 23340253 Free PMC article.
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