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Page 1
Insular Microbiogeography: Three Pathogens as Exemplars.
Kaufman JH, Elkins CA, Davis M, Weis AM, Huang BC, Mammel MK, Patel IR, Beck KL, Edlund S, Chambliss D, Douglas J, Bianco S, Kunitomi M, Weimer BC. Kaufman JH, et al. Among authors: beck kl. Curr Issues Mol Biol. 2020;36:89-108. doi: 10.21775/cimb.036.089. Epub 2019 Oct 9. Curr Issues Mol Biol. 2020. PMID: 31596250 Free article.
Food authentication from shotgun sequencing reads with an application on high protein powders.
Haiminen N, Edlund S, Chambliss D, Kunitomi M, Weimer BC, Ganesan B, Baker R, Markwell P, Davis M, Huang BC, Kong N, Prill RJ, Marlowe CH, Quintanar A, Pierre S, Dubois G, Kaufman JH, Parida L, Beck KL. Haiminen N, et al. Among authors: beck kl. NPJ Sci Food. 2019 Nov 19;3:24. doi: 10.1038/s41538-019-0056-6. eCollection 2019. NPJ Sci Food. 2019. PMID: 31754632 Free PMC article.
Functional Genomics Platform, A Cloud-Based Platform for Studying Microbial Life at Scale.
Seabolt EE, Nayar G, Krishnareddy H, Agarwal A, Beck KL, Terrizzano I, Kandogan E, Kunitomi M, Roth M, Mukherjee V, Kaufman JH. Seabolt EE, et al. Among authors: beck kl. IEEE/ACM Trans Comput Biol Bioinform. 2022 Mar-Apr;19(2):940-952. doi: 10.1109/TCBB.2020.3021231. Epub 2022 Apr 1. IEEE/ACM Trans Comput Biol Bioinform. 2022. PMID: 32877338
Monitoring the microbiome for food safety and quality using deep shotgun sequencing.
Beck KL, Haiminen N, Chambliss D, Edlund S, Kunitomi M, Huang BC, Kong N, Ganesan B, Baker R, Markwell P, Kawas B, Davis M, Prill RJ, Krishnareddy H, Seabolt E, Marlowe CH, Pierre S, Quintanar A, Parida L, Dubois G, Kaufman J, Weimer BC. Beck KL, et al. NPJ Sci Food. 2021 Feb 8;5(1):3. doi: 10.1038/s41538-020-00083-y. NPJ Sci Food. 2021. PMID: 33558514 Free PMC article.
Predicting Epitope Candidates for SARS-CoV-2.
Agarwal A, Beck KL, Capponi S, Kunitomi M, Nayar G, Seabolt E, Mahadeshwar G, Bianco S, Mukherjee V, Kaufman JH. Agarwal A, et al. Among authors: beck kl. Viruses. 2022 Aug 21;14(8):1837. doi: 10.3390/v14081837. Viruses. 2022. PMID: 36016459 Free PMC article.
Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes.
Armstrong G, Cantrell K, Huang S, McDonald D, Haiminen N, Carrieri AP, Zhu Q, Gonzalez A, McGrath I, Beck KL, Hakim D, Havulinna AS, Méric G, Niiranen T, Lahti L, Salomaa V, Jain M, Inouye M, Swafford AD, Kim HC, Parida L, Vázquez-Baeza Y, Knight R. Armstrong G, et al. Among authors: beck kl. Genome Res. 2021 Nov;31(11):2131-2137. doi: 10.1101/gr.275777.121. Epub 2021 Sep 3. Genome Res. 2021. PMID: 34479875 Free PMC article.
Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity.
Shaffer JP, Nothias LF, Thompson LR, Sanders JG, Salido RA, Couvillion SP, Brejnrod AD, Lejzerowicz F, Haiminen N, Huang S, Lutz HL, Zhu Q, Martino C, Morton JT, Karthikeyan S, Nothias-Esposito M, Dührkop K, Böcker S, Kim HW, Aksenov AA, Bittremieux W, Minich JJ, Marotz C, Bryant MM, Sanders K, Schwartz T, Humphrey G, Vásquez-Baeza Y, Tripathi A, Parida L, Carrieri AP, Beck KL, Das P, González A, McDonald D, Ladau J, Karst SM, Albertsen M, Ackermann G, DeReus J, Thomas T, Petras D, Shade A, Stegen J, Song SJ, Metz TO, Swafford AD, Dorrestein PC, Jansson JK, Gilbert JA, Knight R; Earth Microbiome Project 500 (EMP500) Consortium. Shaffer JP, et al. Among authors: beck kl. Nat Microbiol. 2022 Dec;7(12):2128-2150. doi: 10.1038/s41564-022-01266-x. Epub 2022 Nov 28. Nat Microbiol. 2022. PMID: 36443458 Free PMC article.
104 results