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New tools to analyze overlapping coding regions.
BMC Bioinformatics. 2016 Dec 13;17(1):530. doi: 10.1186/s12859-016-1389-7.
BMC Bioinformatics. 2016.
PMID: 27964762
Free PMC article.
RNAdualPF: software to compute the dual partition function with sample applications in molecular evolution theory.
Garcia-Martin JA, Bayegan AH, Dotu I, Clote P.
Garcia-Martin JA, et al. Among authors: bayegan ah.
BMC Bioinformatics. 2016 Oct 19;17(1):424. doi: 10.1186/s12859-016-1280-6.
BMC Bioinformatics. 2016.
PMID: 27756204
Free PMC article.
Item in Clipboard
Network Properties of the Ensemble of RNA Structures.
Clote P, Bayegan A.
Clote P, et al.
PLoS One. 2015 Oct 21;10(10):e0139476. doi: 10.1371/journal.pone.0139476. eCollection 2015.
PLoS One. 2015.
PMID: 26488894
Free PMC article.
Item in Clipboard
RNA folding kinetics using Monte Carlo and Gillespie algorithms.
Clote P, Bayegan AH.
Clote P, et al. Among authors: bayegan ah.
J Math Biol. 2018 Apr;76(5):1195-1227. doi: 10.1007/s00285-017-1169-7. Epub 2017 Aug 5.
J Math Biol. 2018.
PMID: 28780735
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RNAmountAlign: Efficient software for local, global, semiglobal pairwise and multiple RNA sequence/structure alignment.
Bayegan AH, Clote P.
Bayegan AH, et al.
PLoS One. 2020 Jan 24;15(1):e0227177. doi: 10.1371/journal.pone.0227177. eCollection 2020.
PLoS One. 2020.
PMID: 31978147
Free PMC article.
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