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The complete methylome of Helicobacter pylori UM032.
Lee WC, Anton BP, Wang S, Baybayan P, Singh S, Ashby M, Chua EG, Tay CY, Thirriot F, Loke MF, Goh KL, Marshall BJ, Roberts RJ, Vadivelu J. Lee WC, et al. Among authors: baybayan p. BMC Genomics. 2015 Jun 2;16(1):424. doi: 10.1186/s12864-015-1585-2. BMC Genomics. 2015. PMID: 26031894 Free PMC article.
Comparing the genomes of Helicobacter pylori clinical strain UM032 and Mice-adapted derivatives.
Khosravi Y, Rehvathy V, Wee WY, Wang S, Baybayan P, Singh S, Ashby M, Ong J, Amoyo AA, Seow SW, Choo SW, Perkins T, Chua EG, Tay A, Marshall BJ, Loke MF, Goh KL, Pettersson S, Vadivelu J. Khosravi Y, et al. Among authors: baybayan p. Gut Pathog. 2013 Aug 19;5:25. doi: 10.1186/1757-4749-5-25. eCollection 2013. Gut Pathog. 2013. PMID: 23957912 Free PMC article.
Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles.
Nandi T, Holden MT, Didelot X, Mehershahi K, Boddey JA, Beacham I, Peak I, Harting J, Baybayan P, Guo Y, Wang S, How LC, Sim B, Essex-Lopresti A, Sarkar-Tyson M, Nelson M, Smither S, Ong C, Aw LT, Hoon CH, Michell S, Studholme DJ, Titball R, Chen SL, Parkhill J, Tan P. Nandi T, et al. Among authors: baybayan p. Genome Res. 2015 Jan;25(1):129-41. doi: 10.1101/gr.177543.114. Epub 2014 Sep 18. Genome Res. 2015. PMID: 25236617 Free PMC article.
Structural variation and its potential impact on genome instability: Novel discoveries in the EGFR landscape by long-read sequencing.
Cook GW, Benton MG, Akerley W, Mayhew GF, Moehlenkamp C, Raterman D, Burgess DL, Rowell WJ, Lambert C, Eng K, Gu J, Baybayan P, Fussell JT, Herbold HD, O'Shea JM, Varghese TK, Emerson LL. Cook GW, et al. Among authors: baybayan p. PLoS One. 2020 Jan 15;15(1):e0226340. doi: 10.1371/journal.pone.0226340. eCollection 2020. PLoS One. 2020. PMID: 31940362 Free PMC article.
Approaches to long-read sequencing in a clinical setting to improve diagnostic rate.
Sanford Kobayashi E, Batalov S, Wenger AM, Lambert C, Dhillon H, Hall RJ, Baybayan P, Ding Y, Rego S, Wigby K, Friedman J, Hobbs C, Bainbridge MN. Sanford Kobayashi E, et al. Among authors: baybayan p. Sci Rep. 2022 Oct 9;12(1):16945. doi: 10.1038/s41598-022-20113-x. Sci Rep. 2022. PMID: 36210382 Free PMC article.
Real-time DNA sequencing from single polymerase molecules.
Eid J, Fehr A, Gray J, Luong K, Lyle J, Otto G, Peluso P, Rank D, Baybayan P, Bettman B, Bibillo A, Bjornson K, Chaudhuri B, Christians F, Cicero R, Clark S, Dalal R, Dewinter A, Dixon J, Foquet M, Gaertner A, Hardenbol P, Heiner C, Hester K, Holden D, Kearns G, Kong X, Kuse R, Lacroix Y, Lin S, Lundquist P, Ma C, Marks P, Maxham M, Murphy D, Park I, Pham T, Phillips M, Roy J, Sebra R, Shen G, Sorenson J, Tomaney A, Travers K, Trulson M, Vieceli J, Wegener J, Wu D, Yang A, Zaccarin D, Zhao P, Zhong F, Korlach J, Turner S. Eid J, et al. Among authors: baybayan p. Science. 2009 Jan 2;323(5910):133-8. doi: 10.1126/science.1162986. Epub 2008 Nov 20. Science. 2009. PMID: 19023044
Reference Grade Characterization of Polymorphisms in Full-Length HLA Class I and II Genes With Short-Read Sequencing on the ION PGM System and Long-Reads Generated by Single Molecule, Real-Time Sequencing on the PacBio Platform.
Suzuki S, Ranade S, Osaki K, Ito S, Shigenari A, Ohnuki Y, Oka A, Masuya A, Harting J, Baybayan P, Kitazume M, Sunaga J, Morishima S, Morishima Y, Inoko H, Kulski JK, Shiina T. Suzuki S, et al. Among authors: baybayan p. Front Immunol. 2018 Oct 4;9:2294. doi: 10.3389/fimmu.2018.02294. eCollection 2018. Front Immunol. 2018. PMID: 30337930 Free PMC article.
29 results