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Multiple Sequence Alignment.
Bawono P, Dijkstra M, Pirovano W, Feenstra A, Abeln S, Heringa J. Bawono P, et al. Methods Mol Biol. 2017;1525:167-189. doi: 10.1007/978-1-4939-6622-6_8. Methods Mol Biol. 2017. PMID: 27896722
Motif-Aware PRALINE: Improving the alignment of motif regions.
Dijkstra M, Bawono P, Abeln S, Feenstra KA, Fokkink W, Heringa J. Dijkstra M, et al. Among authors: bawono p. PLoS Comput Biol. 2018 Nov 1;14(11):e1006547. doi: 10.1371/journal.pcbi.1006547. eCollection 2018 Nov. PLoS Comput Biol. 2018. PMID: 30383764 Free PMC article.
General secretion signal for the mycobacterial type VII secretion pathway.
Daleke MH, Ummels R, Bawono P, Heringa J, Vandenbroucke-Grauls CM, Luirink J, Bitter W. Daleke MH, et al. Among authors: bawono p. Proc Natl Acad Sci U S A. 2012 Jul 10;109(28):11342-7. doi: 10.1073/pnas.1119453109. Epub 2012 Jun 25. Proc Natl Acad Sci U S A. 2012. PMID: 22733768 Free PMC article.