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Joining European Scientific Forces to Face Pandemics.
Vasconcelos MH, Alcaro S, Arechavala-Gomeza V, Baumbach J, Borges F, Brevini TAL, Rivas JL, Devaux Y, Hozak P, Keinänen-Toivola MM, Lattanzi G, Mohr T, Murovska M, Prusty BK, Quinlan RA, Pérez-Sala D, Scheibenbogen C, Schmidt HHHW, Silveira I, Tieri P, Tolios A, Riganti C. Vasconcelos MH, et al. Among authors: baumbach j. Trends Microbiol. 2021 Feb;29(2):92-97. doi: 10.1016/j.tim.2020.10.008. Epub 2020 Dec 4. Trends Microbiol. 2021. PMID: 33288385 Free PMC article.
Community effort endorsing multiscale modelling, multiscale data science and multiscale computing for systems medicine.
Zanin M, Chorbev I, Stres B, Stalidzans E, Vera J, Tieri P, Castiglione F, Groen D, Zheng H, Baumbach J, Schmid JA, Basilio J, Klimek P, Debeljak N, Rozman D, Schmidt HHHW. Zanin M, et al. Among authors: baumbach j. Brief Bioinform. 2019 May 21;20(3):1057-1062. doi: 10.1093/bib/bbx160. Brief Bioinform. 2019. PMID: 29220509 Free PMC article. Review.
EpiGEN: an epistasis simulation pipeline.
Blumenthal DB, Viola L, List M, Baumbach J, Tieri P, Kacprowski T. Blumenthal DB, et al. Among authors: baumbach j. Bioinformatics. 2020 Dec 8;36(19):4957-4959. doi: 10.1093/bioinformatics/btaa245. Bioinformatics. 2020. PMID: 32289146
Network and Systems Medicine: Position Paper of the European Collaboration on Science and Technology Action on Open Multiscale Systems Medicine.
Comte B, Baumbach J, Benis A, Basílio J, Debeljak N, Flobak Å, Franken C, Harel N, He F, Kuiper M, Méndez Pérez JA, Pujos-Guillot E, Režen T, Rozman D, Schmid JA, Scerri J, Tieri P, Van Steen K, Vasudevan S, Watterson S, Schmidt HHHW. Comte B, et al. Among authors: baumbach j. Netw Syst Med. 2020 Jul 6;3(1):67-90. doi: 10.1089/nsm.2020.0004. eCollection 2020. Netw Syst Med. 2020. PMID: 32954378 Free PMC article. Review.
BiCoN: network-constrained biclustering of patients and omics data.
Lazareva O, Canzar S, Yuan K, Baumbach J, Blumenthal DB, Tieri P, Kacprowski T, List M. Lazareva O, et al. Among authors: baumbach j. Bioinformatics. 2021 Aug 25;37(16):2398-2404. doi: 10.1093/bioinformatics/btaa1076. Bioinformatics. 2021. PMID: 33367514
Flimma: a federated and privacy-aware tool for differential gene expression analysis.
Zolotareva O, Nasirigerdeh R, Matschinske J, Torkzadehmahani R, Bakhtiari M, Frisch T, Späth J, Blumenthal DB, Abbasinejad A, Tieri P, Kaissis G, Rückert D, Wenke NK, List M, Baumbach J. Zolotareva O, et al. Among authors: baumbach j. Genome Biol. 2021 Dec 14;22(1):338. doi: 10.1186/s13059-021-02553-2. Genome Biol. 2021. PMID: 34906207 Free PMC article.
Cancer driver drug interaction explorer.
Hartung M, Anastasi E, Mamdouh ZM, Nogales C, Schmidt HHHW, Baumbach J, Zolotareva O, List M. Hartung M, et al. Among authors: baumbach j. Nucleic Acids Res. 2022 Jul 5;50(W1):W138-W144. doi: 10.1093/nar/gkac384. Nucleic Acids Res. 2022. PMID: 35580047 Free PMC article.
From single drug targets to synergistic network pharmacology in ischemic stroke.
Casas AI, Hassan AA, Larsen SJ, Gomez-Rangel V, Elbatreek M, Kleikers PWM, Guney E, Egea J, López MG, Baumbach J, Schmidt HHHW. Casas AI, et al. Among authors: baumbach j. Proc Natl Acad Sci U S A. 2019 Apr 2;116(14):7129-7136. doi: 10.1073/pnas.1820799116. Epub 2019 Mar 20. Proc Natl Acad Sci U S A. 2019. PMID: 30894481 Free PMC article.
378 results