Baumbach J - Search Results

1

Parameter estimation of qualitative biological regulatory networks on high performance computing hardware.

Saeed MT, Ahmad J, Baumbach J, Pauling J, Shafi A, Paracha RZ, Hayat A, Ali A. Saeed MT, et al. Among authors: baumbach j. BMC Syst Biol. 2018 Dec 29;12(1):146. doi: 10.1186/s12918-018-0670-y. BMC Syst Biol. 2018. PMID: 30594246 Free PMC article.

2

CoryneRegNet 6.0--Updated database content, new analysis methods and novel features focusing on community demands.

Pauling J, Röttger R, Tauch A, Azevedo V, Baumbach J. Pauling J, et al. Among authors: baumbach j. Nucleic Acids Res. 2012 Jan;40(Database issue):D610-4. doi: 10.1093/nar/gkr883. Epub 2011 Nov 12. Nucleic Acids Res. 2012. PMID: 22080556 Free PMC article.

3

On the trail of EHEC/EAEC--unraveling the gene regulatory networks of human pathogenic Escherichia coli bacteria.

Pauling J, Röttger R, Neuner A, Salgado H, Collado-Vides J, Kalaghatgi P, Azevedo V, Tauch A, Pühler A, Baumbach J. Pauling J, et al. Among authors: baumbach j. Integr Biol (Camb). 2012 Jul;4(7):728-33. doi: 10.1039/c2ib00132b. Epub 2012 Feb 9. Integr Biol (Camb). 2012. PMID: 22318347

4

Efficient key pathway mining: combining networks and OMICS data.

Alcaraz N, Friedrich T, Kötzing T, Krohmer A, Müller J, Pauling J, Baumbach J. Alcaraz N, et al. Among authors: baumbach j. Integr Biol (Camb). 2012 Jul;4(7):756-64. doi: 10.1039/c2ib00133k. Epub 2012 Feb 21. Integr Biol (Camb). 2012. PMID: 22353882

5

Mature Epitope Density--a strategy for target selection based on immunoinformatics and exported prokaryotic proteins.

Santos AR, Pereira VB, Barbosa E, Baumbach J, Pauling J, Röttger R, Turk MZ, Silva A, Miyoshi A, Azevedo V. Santos AR, et al. Among authors: baumbach j. BMC Genomics. 2013;14 Suppl 6(Suppl 6):S4. doi: 10.1186/1471-2164-14-S6-S4. Epub 2013 Oct 25. BMC Genomics. 2013. PMID: 24564223 Free PMC article.

6

Elucidation of epithelial-mesenchymal transition-related pathways in a triple-negative breast cancer cell line model by multi-omics interactome analysis.

Pauling JK, Christensen AG, Batra R, Alcaraz N, Barbosa E, Larsen MR, Beck HC, Leth-Larsen R, Azevedo V, Ditzel HJ, Baumbach J. Pauling JK, et al. Among authors: baumbach j. Integr Biol (Camb). 2014 Nov;6(11):1058-68. doi: 10.1039/c4ib00137k. Integr Biol (Camb). 2014. PMID: 25124678

7

KeyPathwayMiner 4.0: condition-specific pathway analysis by combining multiple omics studies and networks with Cytoscape.

Alcaraz N, Pauling J, Batra R, Barbosa E, Junge A, Christensen AG, Azevedo V, Ditzel HJ, Baumbach J. Alcaraz N, et al. Among authors: baumbach j. BMC Syst Biol. 2014 Aug 19;8:99. doi: 10.1186/s12918-014-0099-x. BMC Syst Biol. 2014. PMID: 25134827 Free PMC article.

8

Modeling and analysis of innate immune responses induced by the host cells against hepatitis C virus infection.

Obaid A, Ahmad J, Naz A, Awan FM, Paracha RZ, Tareen SH, Anjum S, Raza A, Baumbach J, Ali A. Obaid A, et al. Among authors: baumbach j. Integr Biol (Camb). 2015 May;7(5):544-59. doi: 10.1039/c4ib00285g. Epub 2015 Apr 7. Integr Biol (Camb). 2015. PMID: 25848650

9

On the performance of de novo pathway enrichment.

Batra R, Alcaraz N, Gitzhofer K, Pauling J, Ditzel HJ, Hellmuth M, Baumbach J, List M. Batra R, et al. Among authors: baumbach j. NPJ Syst Biol Appl. 2017 Mar 3;3:6. doi: 10.1038/s41540-017-0007-2. eCollection 2017. NPJ Syst Biol Appl. 2017. PMID: 28649433 Free PMC article.

10

PanRV: Pangenome-reverse vaccinology approach for identifications of potential vaccine candidates in microbial pangenome.

Naz K, Naz A, Ashraf ST, Rizwan M, Ahmad J, Baumbach J, Ali A. Naz K, et al. Among authors: baumbach j. BMC Bioinformatics. 2019 Mar 12;20(1):123. doi: 10.1186/s12859-019-2713-9. BMC Bioinformatics. 2019. PMID: 30871454 Free PMC article.

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