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PIPS: pathogenicity island prediction software.
Soares SC, Abreu VA, Ramos RT, Cerdeira L, Silva A, Baumbach J, Trost E, Tauch A, Hirata R Jr, Mattos-Guaraldi AL, Miyoshi A, Azevedo V. Soares SC, et al. Among authors: baumbach j. PLoS One. 2012;7(2):e30848. doi: 10.1371/journal.pone.0030848. Epub 2012 Feb 15. PLoS One. 2012. PMID: 22355329 Free PMC article.
Evidence for reductive genome evolution and lateral acquisition of virulence functions in two Corynebacterium pseudotuberculosis strains.
Ruiz JC, D'Afonseca V, Silva A, Ali A, Pinto AC, Santos AR, Rocha AA, Lopes DO, Dorella FA, Pacheco LG, Costa MP, Turk MZ, Seyffert N, Moraes PM, Soares SC, Almeida SS, Castro TL, Abreu VA, Trost E, Baumbach J, Tauch A, Schneider MP, McCulloch J, Cerdeira LT, Ramos RT, Zerlotini A, Dominitini A, Resende DM, Coser EM, Oliveira LM, Pedrosa AL, Vieira CU, Guimarães CT, Bartholomeu DC, Oliveira DM, Santos FR, Rabelo ÉM, Lobo FP, Franco GR, Costa AF, Castro IM, Dias SR, Ferro JA, Ortega JM, Paiva LV, Goulart LR, Almeida JF, Ferro MI, Carneiro NP, Falcão PR, Grynberg P, Teixeira SM, Brommonschenkel S, Oliveira SC, Meyer R, Moore RJ, Miyoshi A, Oliveira GC, Azevedo V. Ruiz JC, et al. Among authors: baumbach j. PLoS One. 2011 Apr 18;6(4):e18551. doi: 10.1371/journal.pone.0018551. PLoS One. 2011. PMID: 21533164 Free PMC article.
GIPSy: Genomic island prediction software.
Soares SC, Geyik H, Ramos RT, de Sá PH, Barbosa EG, Baumbach J, Figueiredo HC, Miyoshi A, Tauch A, Silva A, Azevedo V. Soares SC, et al. Among authors: baumbach j. J Biotechnol. 2016 Aug 20;232:2-11. doi: 10.1016/j.jbiotec.2015.09.008. Epub 2015 Sep 12. J Biotechnol. 2016. PMID: 26376473 Free article.
Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study.
Cerdeira LT, Carneiro AR, Ramos RT, de Almeida SS, D'Afonseca V, Schneider MP, Baumbach J, Tauch A, McCulloch JA, Azevedo VA, Silva A. Cerdeira LT, et al. Among authors: baumbach j. J Microbiol Methods. 2011 Aug;86(2):218-23. doi: 10.1016/j.mimet.2011.05.008. Epub 2011 May 18. J Microbiol Methods. 2011. PMID: 21620904 Free article.
Value of a newly sequenced bacterial genome.
Barbosa EG, Aburjaile FF, Ramos RT, Carneiro AR, Le Loir Y, Baumbach J, Miyoshi A, Silva A, Azevedo V. Barbosa EG, et al. Among authors: baumbach j. World J Biol Chem. 2014 May 26;5(2):161-8. doi: 10.4331/wjbc.v5.i2.161. World J Biol Chem. 2014. PMID: 24921006 Free PMC article. Review.
An integrative in-silico approach for therapeutic target identification in the human pathogen Corynebacterium diphtheriae.
Jamal SB, Hassan SS, Tiwari S, Viana MV, Benevides LJ, Ullah A, Turjanski AG, Barh D, Ghosh P, Costa DA, Silva A, Röttger R, Baumbach J, Azevedo VAC. Jamal SB, et al. Among authors: baumbach j. PLoS One. 2017 Oct 19;12(10):e0186401. doi: 10.1371/journal.pone.0186401. eCollection 2017. PLoS One. 2017. PMID: 29049350 Free PMC article.
378 results