Baruzzo G - Search Results

1

Cellular population dynamics shape the route to human pluripotency.

Panariello F, Gagliano O, Luni C, Grimaldi A, Angiolillo S, Qin W, Manfredi A, Annunziata P, Slovin S, Vaccaro L, Riccardo S, Bouche V, Dionisi M, Salvi M, Martewicz S, Hu M, Cui M, Stuart H, Laterza C, Baruzzo G, Schiebinger G, Di Camillo B, Cacchiarelli D, Elvassore N. Panariello F, et al. Among authors: baruzzo g. Nat Commun. 2023 May 17;14(1):2829. doi: 10.1038/s41467-023-37270-w. Nat Commun. 2023. PMID: 37198156 Free PMC article.

2

Identify, quantify and characterize cellular communication from single-cell RNA sequencing data with scSeqComm.

Baruzzo G, Cesaro G, Di Camillo B. Baruzzo G, et al. Bioinformatics. 2022 Mar 28;38(7):1920-1929. doi: 10.1093/bioinformatics/btac036. Bioinformatics. 2022. PMID: 35043939

3

Simulation-based comprehensive benchmarking of RNA-seq aligners.

Baruzzo G, Hayer KE, Kim EJ, Di Camillo B, FitzGerald GA, Grant GR. Baruzzo G, et al. Nat Methods. 2017 Feb;14(2):135-139. doi: 10.1038/nmeth.4106. Epub 2016 Dec 12. Nat Methods. 2017. PMID: 27941783 Free PMC article.

4

Single-Cell RNA-Sequencing: Assessment of Differential Expression Analysis Methods.

Dal Molin A, Baruzzo G, Di Camillo B. Dal Molin A, et al. Among authors: baruzzo g. Front Genet. 2017 May 23;8:62. doi: 10.3389/fgene.2017.00062. eCollection 2017. Front Genet. 2017. PMID: 28588607 Free PMC article.

5

SPARSim single cell: a count data simulator for scRNA-seq data.

Baruzzo G, Patuzzi I, Di Camillo B. Baruzzo G, et al. Bioinformatics. 2020 Mar 1;36(5):1468-1475. doi: 10.1093/bioinformatics/btz752. Bioinformatics. 2020. PMID: 31598633

6

Investigating differential abundance methods in microbiome data: A benchmark study.

Cappellato M, Baruzzo G, Di Camillo B. Cappellato M, et al. Among authors: baruzzo g. PLoS Comput Biol. 2022 Sep 8;18(9):e1010467. doi: 10.1371/journal.pcbi.1010467. eCollection 2022 Sep. PLoS Comput Biol. 2022. PMID: 36074761 Free PMC article. Review.

7

Beware to ignore the rare: how imputing zero-values can improve the quality of 16S rRNA gene studies results.

Baruzzo G, Patuzzi I, Di Camillo B. Baruzzo G, et al. BMC Bioinformatics. 2022 Feb 7;22(Suppl 15):618. doi: 10.1186/s12859-022-04587-0. BMC Bioinformatics. 2022. PMID: 35130833 Free PMC article.

8

Modeling Microbial Community Networks: Methods and Tools.

Cappellato M, Baruzzo G, Patuzzi I, Di Camillo B. Cappellato M, et al. Among authors: baruzzo g. Curr Genomics. 2021 Dec 16;22(4):267-290. doi: 10.2174/1389202921999200905133146. Curr Genomics. 2021. PMID: 35273458 Free PMC article. Review.

9

Role of the Extracytoplasmic Function Sigma Factor SigE in the Stringent Response of Mycobacterium tuberculosis.

Baruzzo G, Serafini A, Finotello F, Sanavia T, Cioetto-Mazzabò L, Boldrin F, Lavezzo E, Barzon L, Toppo S, Provvedi R, Manganelli R, Di Camillo B. Baruzzo G, et al. Microbiol Spectr. 2023 Mar 22;11(2):e0294422. doi: 10.1128/spectrum.02944-22. Online ahead of print. Microbiol Spectr. 2023. PMID: 36946740 Free PMC article.

10

metaSPARSim: a 16S rRNA gene sequencing count data simulator.

Patuzzi I, Baruzzo G, Losasso C, Ricci A, Di Camillo B. Patuzzi I, et al. Among authors: baruzzo g. BMC Bioinformatics. 2019 Nov 22;20(Suppl 9):416. doi: 10.1186/s12859-019-2882-6. BMC Bioinformatics. 2019. PMID: 31757204 Free PMC article.

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