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Genomic network analysis of environmental and livestock F-type plasmid populations.
Matlock W, Chau KK, AbuOun M, Stubberfield E, Barker L, Kavanagh J, Pickford H, Gilson D, Smith RP, Gweon HS, Hoosdally SJ, Swann J, Sebra R, Bailey MJ, Peto TEA, Crook DW, Anjum MF, Read DS, Walker AS, Stoesser N, Shaw LP; REHAB consortium. Matlock W, et al. Among authors: barker l. ISME J. 2021 Aug;15(8):2322-2335. doi: 10.1038/s41396-021-00926-w. Epub 2021 Mar 1. ISME J. 2021. PMID: 33649550 Free PMC article.
Gonorrhoea treatment failure caused by a Neisseria gonorrhoeae strain with combined ceftriaxone and high-level azithromycin resistance, England, February 2018.
Eyre DW, Sanderson ND, Lord E, Regisford-Reimmer N, Chau K, Barker L, Morgan M, Newnham R, Golparian D, Unemo M, Crook DW, Peto TE, Hughes G, Cole MJ, Fifer H, Edwards A, Andersson MI. Eyre DW, et al. Among authors: barker l. Euro Surveill. 2018 Jul;23(27):1800323. doi: 10.2807/1560-7917.ES.2018.23.27.1800323. Euro Surveill. 2018. PMID: 29991383 Free PMC article.
Optimized use of Oxford Nanopore flowcells for hybrid assemblies.
Lipworth S, Pickford H, Sanderson N, Chau KK, Kavanagh J, Barker L, Vaughan A, Swann J, Andersson M, Jeffery K, Morgan M, Peto TEA, Crook DW, Stoesser N, Walker AS. Lipworth S, et al. Among authors: barker l. Microb Genom. 2020 Nov;6(11):mgen000453. doi: 10.1099/mgen.0.000453. Microb Genom. 2020. PMID: 33174830 Free PMC article.
Ten Years of Population-Level Genomic Escherichia coli and Klebsiella pneumoniae Serotype Surveillance Informs Vaccine Development for Invasive Infections.
Lipworth S, Vihta KD, Chau KK, Kavanagh J, Davies T, George S, Barker L, Vaughan A, Andersson M, Jeffery K, Oakley S, Morgan M, Peto TEA, Crook DW, Walker AS, Stoesser N. Lipworth S, et al. Among authors: barker l. Clin Infect Dis. 2021 Dec 16;73(12):2276-2282. doi: 10.1093/cid/ciab006. Clin Infect Dis. 2021. PMID: 33411882 Free PMC article.
Niche and local geography shape the pangenome of wastewater- and livestock-associated Enterobacteriaceae.
Shaw LP, Chau KK, Kavanagh J, AbuOun M, Stubberfield E, Gweon HS, Barker L, Rodger G, Bowes MJ, Hubbard ATM, Pickford H, Swann J, Gilson D, Smith RP, Hoosdally SJ, Sebra R, Brett H, Peto TEA, Bailey MJ, Crook DW, Read DS, Anjum MF, Walker AS, Stoesser N; REHAB consortium. Shaw LP, et al. Among authors: barker l. Sci Adv. 2021 Apr 9;7(15):eabe3868. doi: 10.1126/sciadv.abe3868. Print 2021 Apr. Sci Adv. 2021. PMID: 33837077 Free PMC article.
The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples.
Gweon HS, Shaw LP, Swann J, De Maio N, AbuOun M, Niehus R, Hubbard ATM, Bowes MJ, Bailey MJ, Peto TEA, Hoosdally SJ, Walker AS, Sebra RP, Crook DW, Anjum MF, Read DS, Stoesser N; REHAB consortium. Gweon HS, et al. Environ Microbiome. 2019 Oct 24;14(1):7. doi: 10.1186/s40793-019-0347-1. Environ Microbiome. 2019. PMID: 33902704 Free PMC article.
Ten-year longitudinal molecular epidemiology study of Escherichia coli and Klebsiella species bloodstream infections in Oxfordshire, UK.
Lipworth S, Vihta KD, Chau K, Barker L, George S, Kavanagh J, Davies T, Vaughan A, Andersson M, Jeffery K, Oakley S, Morgan M, Hopkins S, Peto TEA, Crook DW, Walker AS, Stoesser N. Lipworth S, et al. Among authors: barker l. Genome Med. 2021 Sep 3;13(1):144. doi: 10.1186/s13073-021-00947-2. Genome Med. 2021. PMID: 34479643 Free PMC article.
796 results