Barbosa-Silva A - Search Results

1

Presenting and sharing clinical data using the eTRIKS Standards Master Tree for tranSMART.

Barbosa-Silva A, Bratfalean D, Gu W, Satagopam V, Houston P, Becnel LB, Eifes S, Richard F, Tielmann A, Herzinger S, Rege K, Balling R, Peeters P, Schneider R. Barbosa-Silva A, et al. Bioinformatics. 2019 May 1;35(9):1562-1565. doi: 10.1093/bioinformatics/bty809. Bioinformatics. 2019. PMID: 30256906 Free PMC article.

2

SmartR: an open-source platform for interactive visual analytics for translational research data.

Herzinger S, Gu W, Satagopam V, Eifes S, Rege K, Barbosa-Silva A, Schneider R; eTRIKS Consortium. Herzinger S, et al. Bioinformatics. 2017 Jul 15;33(14):2229-2231. doi: 10.1093/bioinformatics/btx137. Bioinformatics. 2017. PMID: 28334291 Free PMC article.

3

Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases.

Satagopam V, Gu W, Eifes S, Gawron P, Ostaszewski M, Gebel S, Barbosa-Silva A, Balling R, Schneider R. Satagopam V, et al. Big Data. 2016 Jun;4(2):97-108. doi: 10.1089/big.2015.0057. Big Data. 2016. PMID: 27441714 Free PMC article.

4

Data and knowledge management in translational research: implementation of the eTRIKS platform for the IMI OncoTrack consortium.

Gu W, Yildirimman R, Van der Stuyft E, Verbeeck D, Herzinger S, Satagopam V, Barbosa-Silva A, Schneider R, Lange B, Lehrach H, Guo Y, Henderson D, Rowe A; IMI OncoTrack and the IMI eTRIKS consortia. Gu W, et al. BMC Bioinformatics. 2019 Apr 1;20(1):164. doi: 10.1186/s12859-019-2748-y. BMC Bioinformatics. 2019. PMID: 30935364 Free PMC article.

5

LAITOR4HPC: A text mining pipeline based on HPC for building interaction networks.

Piereck B, Oliveira-Lima M, Benko-Iseppon AM, Diehl S, Schneider R, Brasileiro-Vidal AC, Barbosa-Silva A. Piereck B, et al. Among authors: barbosa silva a. BMC Bioinformatics. 2020 Aug 24;21(1):365. doi: 10.1186/s12859-020-03620-4. BMC Bioinformatics. 2020. PMID: 32838742 Free PMC article.

6

Clustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence.

Barbosa-Silva A, Satagopam VP, Schneider R, Ortega JM. Barbosa-Silva A, et al. BMC Bioinformatics. 2008 Mar 5;9:141. doi: 10.1186/1471-2105-9-141. BMC Bioinformatics. 2008. PMID: 18321373 Free PMC article.

7

LAITOR--Literature Assistant for Identification of Terms co-Occurrences and Relationships.

Barbosa-Silva A, Soldatos TG, Magalhães IL, Pavlopoulos GA, Fontaine JF, Andrade-Navarro MA, Schneider R, Ortega JM. Barbosa-Silva A, et al. BMC Bioinformatics. 2010 Feb 1;11:70. doi: 10.1186/1471-2105-11-70. BMC Bioinformatics. 2010. PMID: 20122157 Free PMC article.

8

Martini: using literature keywords to compare gene sets.

Soldatos TG, O'Donoghue SI, Satagopam VP, Jensen LJ, Brown NP, Barbosa-Silva A, Schneider R. Soldatos TG, et al. Nucleic Acids Res. 2010 Jan;38(1):26-38. doi: 10.1093/nar/gkp876. Epub 2009 Oct 25. Nucleic Acids Res. 2010. PMID: 19858102 Free PMC article.

9

A reference guide for tree analysis and visualization.

Pavlopoulos GA, Soldatos TG, Barbosa-Silva A, Schneider R. Pavlopoulos GA, et al. BioData Min. 2010 Feb 22;3(1):1. doi: 10.1186/1756-0381-3-1. BioData Min. 2010. PMID: 20175922 Free PMC article.

10

Caipirini: using gene sets to rank literature.

Soldatos TG, O'Donoghue SI, Satagopam VP, Barbosa-Silva A, Pavlopoulos GA, Wanderley-Nogueira AC, Soares-Cavalcanti NM, Schneider R. Soldatos TG, et al. BioData Min. 2012 Feb 1;5(1):1. doi: 10.1186/1756-0381-5-1. BioData Min. 2012. PMID: 22297131 Free PMC article.

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