Barash D - Search Results

1

Modeling the Interplay between HDV and HBV in Chronic HDV/HBV Patients.

Mhlanga A, Zakh R, Churkin A, Reinharz V, Glenn JS, Etzion O, Cotler SJ, Yurdaydin C, Barash D, Dahari H. Mhlanga A, et al. Among authors: barash d. Mathematics (Basel). 2022 Oct 2;10(20):3917. doi: 10.3390/math10203917. Epub 2022 Oct 21. Mathematics (Basel). 2022. PMID: 36540372 Free PMC article.

2

Inherent speedup limitations in multiple time step/particle mesh Ewald algorithms.

Barash D, Yang L, Qian X, Schlick T. Barash D, et al. J Comput Chem. 2003 Jan 15;24(1):77-88. doi: 10.1002/jcc.10196. J Comput Chem. 2003. PMID: 12483677

3

Finding a common motif of RNA sequences using genetic programming: the GeRNAMo system.

Michal S, Ivry T, Sipper M, Barash D, Schalit-Cohen O. Michal S, et al. Among authors: barash d. IEEE/ACM Trans Comput Biol Bioinform. 2007 Oct-Dec;4(4):596-610. doi: 10.1109/tcbb.2007.1045. IEEE/ACM Trans Comput Biol Bioinform. 2007. PMID: 17975271

4

Sequence-dependent solution structure and motions of 13 TATA/TBP (TATA-box binding protein) complexes.

Strahs D, Barash D, Qian X, Schlick T. Strahs D, et al. Among authors: barash d. Biopolymers. 2003 Jun;69(2):216-43. doi: 10.1002/bip.10409. Biopolymers. 2003. PMID: 12767124

5

Primordia vita. Deconvolution from modern sequences.

Trifonov EN, Gabdank I, Barash D, Sobolevsky Y. Trifonov EN, et al. Among authors: barash d. Orig Life Evol Biosph. 2006 Dec;36(5-6):559-65. doi: 10.1007/s11084-006-9042-5. Orig Life Evol Biosph. 2006. PMID: 17120122

6

RNAmute: RNA secondary structure mutation analysis tool.

Churkin A, Barash D. Churkin A, et al. Among authors: barash d. BMC Bioinformatics. 2006 Apr 25;7:221. doi: 10.1186/1471-2105-7-221. BMC Bioinformatics. 2006. PMID: 16638137 Free PMC article.

7

An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptimal folding solutions.

Churkin A, Barash D. Churkin A, et al. Among authors: barash d. BMC Bioinformatics. 2008 Apr 29;9:222. doi: 10.1186/1471-2105-9-222. BMC Bioinformatics. 2008. PMID: 18445289 Free PMC article.

8

Bioinformatic analysis of the neutrality of RNA secondary structure elements across genotypes reveals evidence for direct evolution of genetic robustness in HCV.

Churkin A, Cohen M, Shemer-Avni Y, Barash D. Churkin A, et al. Among authors: barash d. J Bioinform Comput Biol. 2010 Dec;8(6):1013-26. doi: 10.1142/s0219720010005087. J Bioinform Comput Biol. 2010. PMID: 21121024

9

Mutational analysis in RNAs: comparing programs for RNA deleterious mutation prediction.

Barash D, Churkin A. Barash D, et al. Brief Bioinform. 2011 Mar;12(2):104-14. doi: 10.1093/bib/bbq059. Epub 2010 Aug 11. Brief Bioinform. 2011. PMID: 21422070 Review.

10

The RNAmute web server for the mutational analysis of RNA secondary structures.

Churkin A, Gabdank I, Barash D. Churkin A, et al. Among authors: barash d. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W92-9. doi: 10.1093/nar/gkr207. Epub 2011 Apr 7. Nucleic Acids Res. 2011. PMID: 21478166 Free PMC article.

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