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Assessment of community efforts to advance network-based prediction of protein-protein interactions.
Wang XW, Madeddu L, Spirohn K, Martini L, Fazzone A, Becchetti L, Wytock TP, Kovács IA, Balogh OM, Benczik B, Pétervári M, Ágg B, Ferdinandy P, Vulliard L, Menche J, Colonnese S, Petti M, Scarano G, Cuomo F, Hao T, Laval F, Willems L, Twizere JC, Vidal M, Calderwood MA, Petrillo E, Barabási AL, Silverman EK, Loscalzo J, Velardi P, Liu YY. Wang XW, et al. Among authors: barabasi al. Nat Commun. 2023 Mar 22;14(1):1582. doi: 10.1038/s41467-023-37079-7. Nat Commun. 2023. PMID: 36949045 Free PMC article.
Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans.
Dupuy D, Bertin N, Hidalgo CA, Venkatesan K, Tu D, Lee D, Rosenberg J, Svrzikapa N, Blanc A, Carnec A, Carvunis AR, Pulak R, Shingles J, Reece-Hoyes J, Hunt-Newbury R, Viveiros R, Mohler WA, Tasan M, Roth FP, Le Peuch C, Hope IA, Johnsen R, Moerman DG, Barabási AL, Baillie D, Vidal M. Dupuy D, et al. Among authors: barabasi al. Nat Biotechnol. 2007 Jun;25(6):663-8. doi: 10.1038/nbt1305. Epub 2007 May 7. Nat Biotechnol. 2007. PMID: 17486083
The human disease network.
Goh KI, Cusick ME, Valle D, Childs B, Vidal M, Barabási AL. Goh KI, et al. Among authors: barabasi al. Proc Natl Acad Sci U S A. 2007 May 22;104(21):8685-90. doi: 10.1073/pnas.0701361104. Epub 2007 May 14. Proc Natl Acad Sci U S A. 2007. PMID: 17502601 Free PMC article.
Drug-target network.
Yildirim MA, Goh KI, Cusick ME, Barabási AL, Vidal M. Yildirim MA, et al. Among authors: barabasi al. Nat Biotechnol. 2007 Oct;25(10):1119-26. doi: 10.1038/nbt1338. Nat Biotechnol. 2007. PMID: 17921997
High-quality binary protein interaction map of the yeast interactome network.
Yu H, Braun P, Yildirim MA, Lemmens I, Venkatesan K, Sahalie J, Hirozane-Kishikawa T, Gebreab F, Li N, Simonis N, Hao T, Rual JF, Dricot A, Vazquez A, Murray RR, Simon C, Tardivo L, Tam S, Svrzikapa N, Fan C, de Smet AS, Motyl A, Hudson ME, Park J, Xin X, Cusick ME, Moore T, Boone C, Snyder M, Roth FP, Barabási AL, Tavernier J, Hill DE, Vidal M. Yu H, et al. Among authors: barabasi al. Science. 2008 Oct 3;322(5898):104-10. doi: 10.1126/science.1158684. Epub 2008 Aug 21. Science. 2008. PMID: 18719252 Free PMC article.
An empirical framework for binary interactome mapping.
Venkatesan K, Rual JF, Vazquez A, Stelzl U, Lemmens I, Hirozane-Kishikawa T, Hao T, Zenkner M, Xin X, Goh KI, Yildirim MA, Simonis N, Heinzmann K, Gebreab F, Sahalie JM, Cevik S, Simon C, de Smet AS, Dann E, Smolyar A, Vinayagam A, Yu H, Szeto D, Borick H, Dricot A, Klitgord N, Murray RR, Lin C, Lalowski M, Timm J, Rau K, Boone C, Braun P, Cusick ME, Roth FP, Hill DE, Tavernier J, Wanker EE, Barabási AL, Vidal M. Venkatesan K, et al. Among authors: barabasi al. Nat Methods. 2009 Jan;6(1):83-90. doi: 10.1038/nmeth.1280. Epub 2008 Dec 7. Nat Methods. 2009. PMID: 19060904 Free PMC article.
Interactome networks and human disease.
Vidal M, Cusick ME, Barabási AL. Vidal M, et al. Among authors: barabasi al. Cell. 2011 Mar 18;144(6):986-98. doi: 10.1016/j.cell.2011.02.016. Cell. 2011. PMID: 21414488 Free PMC article. Review.
234 results