Baliga NS - Search Results

1

History and Future Perspectives on the Discipline of Quantitative Systems Pharmacology Modeling and Its Applications.

Azer K, Kaddi CD, Barrett JS, Bai JPF, McQuade ST, Merrill NJ, Piccoli B, Neves-Zaph S, Marchetti L, Lombardo R, Parolo S, Immanuel SRC, Baliga NS. Azer K, et al. Among authors: baliga ns. Front Physiol. 2021 Mar 25;12:637999. doi: 10.3389/fphys.2021.637999. eCollection 2021. Front Physiol. 2021. PMID: 33841175 Free PMC article. Review.

2

Predictive regulatory and metabolic network models for systems analysis of Clostridioides difficile.

Arrieta-Ortiz ML, Immanuel SRC, Turkarslan S, Wu WJ, Girinathan BP, Worley JN, DiBenedetto N, Soutourina O, Peltier J, Dupuy B, Bry L, Baliga NS. Arrieta-Ortiz ML, et al. Among authors: baliga ns. Cell Host Microbe. 2021 Nov 10;29(11):1709-1723.e5. doi: 10.1016/j.chom.2021.09.008. Epub 2021 Oct 11. Cell Host Microbe. 2021. PMID: 34637780 Free PMC article.

3

In vivo commensal control of Clostridioides difficile virulence.

Girinathan BP, DiBenedetto N, Worley JN, Peltier J, Arrieta-Ortiz ML, Immanuel SRC, Lavin R, Delaney ML, Cummins CK, Hoffman M, Luo Y, Gonzalez-Escalona N, Allard M, Onderdonk AB, Gerber GK, Sonenshein AL, Baliga NS, Dupuy B, Bry L. Girinathan BP, et al. Among authors: baliga ns. Cell Host Microbe. 2021 Nov 10;29(11):1693-1708.e7. doi: 10.1016/j.chom.2021.09.007. Epub 2021 Oct 11. Cell Host Microbe. 2021. PMID: 34637781 Free PMC article.

4

Quantitative prediction of conditional vulnerabilities in regulatory and metabolic networks using PRIME.

Immanuel SRC, Arrieta-Ortiz ML, Ruiz RA, Pan M, Lopez Garcia de Lomana A, Peterson EJR, Baliga NS. Immanuel SRC, et al. Among authors: baliga ns. NPJ Syst Biol Appl. 2021 Dec 6;7(1):43. doi: 10.1038/s41540-021-00205-6. NPJ Syst Biol Appl. 2021. PMID: 34873198 Free PMC article.

5

Transcriptome signature of cell viability predicts drug response and drug interaction in Mycobacterium tuberculosis.

Srinivas V, Ruiz RA, Pan M, Immanuel SRC, Peterson EJR, Baliga NS. Srinivas V, et al. Among authors: baliga ns. Cell Rep Methods. 2021 Dec 20;1(8):None. doi: 10.1016/j.crmeth.2021.100123. Cell Rep Methods. 2021. PMID: 34977849 Free PMC article.

6

Reconsidering the in vivo functions of Clostridial Stickland amino acid fermentations.

Pavao A, Graham M, Arrieta-Ortiz ML, Immanuel SRC, Baliga NS, Bry L. Pavao A, et al. Among authors: baliga ns. Anaerobe. 2022 Aug;76:102600. doi: 10.1016/j.anaerobe.2022.102600. Epub 2022 Jun 13. Anaerobe. 2022. PMID: 35709938 Free PMC article. Review.

7

Disrupting the ArcA Regulatory Network Amplifies the Fitness Cost of Tetracycline Resistance in Escherichia coli.

Arrieta-Ortiz ML, Pan M, Kaur A, Pepper-Tunick E, Srinivas V, Dash A, Immanuel SRC, Brooks AN, Shepherd TR, Baliga NS. Arrieta-Ortiz ML, et al. Among authors: baliga ns. mSystems. 2023 Feb 23;8(1):e0090422. doi: 10.1128/msystems.00904-22. Epub 2022 Dec 20. mSystems. 2023. PMID: 36537814 Free PMC article.

8

Autophagy as a Mechanism for Adaptive Prediction-Mediated Emergence of Drug Resistance.

Nivedita N, Aitchison JD, Baliga NS. Nivedita N, et al. Among authors: baliga ns. Front Microbiol. 2021 Sep 10;12:712631. doi: 10.3389/fmicb.2021.712631. eCollection 2021. Front Microbiol. 2021. PMID: 34566920 Free PMC article.

9

Reverse engineering systems models of regulation: discovery, prediction and mechanisms.

Ashworth J, Wurtmann EJ, Baliga NS. Ashworth J, et al. Among authors: baliga ns. Curr Opin Biotechnol. 2012 Aug;23(4):598-603. doi: 10.1016/j.copbio.2011.12.005. Epub 2011 Dec 28. Curr Opin Biotechnol. 2012. PMID: 22209016 Free PMC article. Review.

10

Mechanism Across Scales: A Holistic Modeling Framework Integrating Laboratory and Field Studies for Microbial Ecology.

Lui LM, Majumder EL, Smith HJ, Carlson HK, von Netzer F, Fields MW, Stahl DA, Zhou J, Hazen TC, Baliga NS, Adams PD, Arkin AP. Lui LM, et al. Among authors: baliga ns. Front Microbiol. 2021 Mar 24;12:642422. doi: 10.3389/fmicb.2021.642422. eCollection 2021. Front Microbiol. 2021. PMID: 33841364 Free PMC article.

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