Baker S - Search Results

1

Direct inference and control of genetic population structure from RNA sequencing data.

Fachrul M, Karkey A, Shakya M, Judd LM, Harshegyi T, Sim KS, Tonks S, Dongol S, Shrestha R, Salim A; STRATAA study group; Baker S, Pollard AJ, Khor CC, Dolecek C, Basnyat B, Dunstan SJ, Holt KE, Inouye M. Fachrul M, et al. Among authors: baker s. Commun Biol. 2023 Aug 2;6(1):804. doi: 10.1038/s42003-023-05171-9. Commun Biol. 2023. PMID: 37532769 Free PMC article.

2

The genome of Salmonella enterica serovar Typhi.

Baker S, Dougan G. Baker S, et al. Clin Infect Dis. 2007 Jul 15;45 Suppl 1:S29-33. doi: 10.1086/518143. Clin Infect Dis. 2007. PMID: 17582565 Review.

3

A linear plasmid truncation induces unidirectional flagellar phase change in H:z66 positive Salmonella Typhi.

Baker S, Holt K, Whitehead S, Goodhead I, Perkins T, Stocker B, Hardy J, Dougan G. Baker S, et al. Mol Microbiol. 2007 Dec;66(5):1207-18. doi: 10.1111/j.1365-2958.2007.05995.x. Epub 2007 Nov 1. Mol Microbiol. 2007. PMID: 17976161 Free PMC article.

4

High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi.

Holt KE, Parkhill J, Mazzoni CJ, Roumagnac P, Weill FX, Goodhead I, Rance R, Baker S, Maskell DJ, Wain J, Dolecek C, Achtman M, Dougan G. Holt KE, et al. Among authors: baker s. Nat Genet. 2008 Aug;40(8):987-93. doi: 10.1038/ng.195. Epub 2008 Jul 27. Nat Genet. 2008. PMID: 18660809 Free PMC article.

5

Kathmandu, Nepal: still an enteric fever capital of the world.

Karkey A, Aryjal A, Basnyat B, Baker S. Karkey A, et al. Among authors: baker s. J Infect Dev Ctries. 2008 Dec 1;2(6):461-5. doi: 10.3855/jidc.162. J Infect Dev Ctries. 2008. PMID: 19745524 Free article. Review.

6

Searching for the elusive typhoid diagnostic.

Baker S, Favorov M, Dougan G. Baker S, et al. BMC Infect Dis. 2010 Mar 5;10:45. doi: 10.1186/1471-2334-10-45. BMC Infect Dis. 2010. PMID: 20205702 Free PMC article. Review.

7

The sensitivity of real-time PCR amplification targeting invasive Salmonella serovars in biological specimens.

Nga TV, Karkey A, Dongol S, Thuy HN, Dunstan S, Holt K, Tu le TP, Campbell JI, Chau TT, Chau NV, Arjyal A, Koirala S, Basnyat B, Dolecek C, Farrar J, Baker S. Nga TV, et al. Among authors: baker s. BMC Infect Dis. 2010 May 21;10:125. doi: 10.1186/1471-2334-10-125. BMC Infect Dis. 2010. PMID: 20492644 Free PMC article.

8

High-throughput bacterial SNP typing identifies distinct clusters of Salmonella Typhi causing typhoid in Nepalese children.

Holt KE, Baker S, Dongol S, Basnyat B, Adhikari N, Thorson S, Pulickal AS, Song Y, Parkhill J, Farrar JJ, Murdoch DR, Kelly DF, Pollard AJ, Dougan G. Holt KE, et al. Among authors: baker s. BMC Infect Dis. 2010 May 31;10:144. doi: 10.1186/1471-2334-10-144. BMC Infect Dis. 2010. PMID: 20509974 Free PMC article.

9

Suitable disk antimicrobial susceptibility breakpoints defining Salmonella enterica serovar Typhi isolates with reduced susceptibility to fluoroquinolones.

Parry CM, Thuy CT, Dongol S, Karkey A, Vinh H, Chinh NT, Duy PT, Thieu Nga TV, Campbell JI, Van Minh Hoang N, Arjyal A, Bhutta ZA, Bhattacharya SK, Agtini MD, Dong B, Canh DG, Naheed A, Wain J, Tinh Hien T, Basnyat B, Ochiai L, Clemens J, Farrar JJ, Dolecek C, Baker S. Parry CM, et al. Among authors: baker s. Antimicrob Agents Chemother. 2010 Dec;54(12):5201-8. doi: 10.1128/AAC.00963-10. Epub 2010 Sep 13. Antimicrob Agents Chemother. 2010. PMID: 20837759 Free PMC article.

10

Navigating the future of bacterial molecular epidemiology.

Baker S, Hanage WP, Holt KE. Baker S, et al. Curr Opin Microbiol. 2010 Oct;13(5):640-5. doi: 10.1016/j.mib.2010.08.002. Epub 2010 Sep 16. Curr Opin Microbiol. 2010. PMID: 20846899 Free PMC article. Review.

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