Baker D - Search Results

1

Enantioselective enzymes by computational design and in silico screening.

Wijma HJ, Floor RJ, Bjelic S, Marrink SJ, Baker D, Janssen DB. Wijma HJ, et al. Among authors: baker d. Angew Chem Int Ed Engl. 2015 Mar 16;54(12):3726-30. doi: 10.1002/anie.201411415. Epub 2015 Feb 4. Angew Chem Int Ed Engl. 2015. PMID: 25651000

2

De novo enzyme design using Rosetta3.

Richter F, Leaver-Fay A, Khare SD, Bjelic S, Baker D. Richter F, et al. Among authors: baker d. PLoS One. 2011;6(5):e19230. doi: 10.1371/journal.pone.0019230. Epub 2011 May 16. PLoS One. 2011. PMID: 21603656 Free PMC article.

3

Computational design of enone-binding proteins with catalytic activity for the Morita-Baylis-Hillman reaction.

Bjelic S, Nivón LG, Çelebi-Ölçüm N, Kiss G, Rosewall CF, Lovick HM, Ingalls EL, Gallaher JL, Seetharaman J, Lew S, Montelione GT, Hunt JF, Michael FE, Houk KN, Baker D. Bjelic S, et al. Among authors: baker d. ACS Chem Biol. 2013 Apr 19;8(4):749-57. doi: 10.1021/cb3006227. Epub 2013 Jan 30. ACS Chem Biol. 2013. PMID: 23330600 Free PMC article.

4

Computational enzyme design.

Kiss G, Çelebi-Ölçüm N, Moretti R, Baker D, Houk KN. Kiss G, et al. Among authors: baker d. Angew Chem Int Ed Engl. 2013 May 27;52(22):5700-25. doi: 10.1002/anie.201204077. Epub 2013 Mar 25. Angew Chem Int Ed Engl. 2013. PMID: 23526810 Review.

5

Exploration of alternate catalytic mechanisms and optimization strategies for retroaldolase design.

Bjelic S, Kipnis Y, Wang L, Pianowski Z, Vorobiev S, Su M, Seetharaman J, Xiao R, Kornhaber G, Hunt JF, Tong L, Hilvert D, Baker D. Bjelic S, et al. Among authors: baker d. J Mol Biol. 2014 Jan 9;426(1):256-71. doi: 10.1016/j.jmb.2013.10.012. Epub 2013 Oct 23. J Mol Biol. 2014. PMID: 24161950 Free PMC article.

6

Automating human intuition for protein design.

Nivón LG, Bjelic S, King C, Baker D. Nivón LG, et al. Among authors: baker d. Proteins. 2014 May;82(5):858-66. doi: 10.1002/prot.24463. Epub 2013 Nov 22. Proteins. 2014. PMID: 24265170 Free article.

7

Computationally designed libraries for rapid enzyme stabilization.

Wijma HJ, Floor RJ, Jekel PA, Baker D, Marrink SJ, Janssen DB. Wijma HJ, et al. Among authors: baker d. Protein Eng Des Sel. 2014 Feb;27(2):49-58. doi: 10.1093/protein/gzt061. Epub 2014 Jan 8. Protein Eng Des Sel. 2014. PMID: 24402331 Free PMC article.

8

De novo-designed enzymes as small-molecule-regulated fluorescence imaging tags and fluorescent reporters.

Liu Y, Zhang X, Tan YL, Bhabha G, Ekiert DC, Kipnis Y, Bjelic S, Baker D, Kelly JW. Liu Y, et al. Among authors: baker d. J Am Chem Soc. 2014 Sep 24;136(38):13102-5. doi: 10.1021/ja5056356. Epub 2014 Sep 11. J Am Chem Soc. 2014. PMID: 25209927 Free PMC article.

9

Optimization of the in-silico-designed kemp eliminase KE70 by computational design and directed evolution.

Khersonsky O, Röthlisberger D, Wollacott AM, Murphy P, Dym O, Albeck S, Kiss G, Houk KN, Baker D, Tawfik DS. Khersonsky O, et al. Among authors: baker d. J Mol Biol. 2011 Apr 1;407(3):391-412. doi: 10.1016/j.jmb.2011.01.041. Epub 2011 Jan 28. J Mol Biol. 2011. PMID: 21277311 Free PMC article.

10

Small molecule probes to quantify the functional fraction of a specific protein in a cell with minimal folding equilibrium shifts.

Liu Y, Tan YL, Zhang X, Bhabha G, Ekiert DC, Genereux JC, Cho Y, Kipnis Y, Bjelic S, Baker D, Kelly JW. Liu Y, et al. Among authors: baker d. Proc Natl Acad Sci U S A. 2014 Mar 25;111(12):4449-54. doi: 10.1073/pnas.1323268111. Epub 2014 Mar 3. Proc Natl Acad Sci U S A. 2014. PMID: 24591605 Free PMC article.

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