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The precision of the symmetry in Z-ring placement in Escherichia coli is hampered at critical temperatures.
Phys Biol. 2018 May 18;15(5):056002. doi: 10.1088/1478-3975/aac1cb.
Phys Biol. 2018.
PMID: 29717708
Temperature-dependence of the single-cell variability in the kinetics of transcription activation in Escherichia coli.
Goncalves NSM, Startceva S, Palma CSD, Bahrudeen MNM, Oliveira SMD, Ribeiro AS.
Goncalves NSM, et al. Among authors: bahrudeen mnm.
Phys Biol. 2018 Jan 24;15(2):026007. doi: 10.1088/1478-3975/aa9ddf.
Phys Biol. 2018.
PMID: 29182518
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Estimating RNA numbers in single cells by RNA fluorescent tagging and flow cytometry.
Bahrudeen MNM, Chauhan V, Palma CSD, Oliveira SMD, Kandavalli VK, Ribeiro AS.
Bahrudeen MNM, et al.
J Microbiol Methods. 2019 Nov;166:105745. doi: 10.1016/j.mimet.2019.105745. Epub 2019 Oct 22.
J Microbiol Methods. 2019.
PMID: 31654657
Free article.
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Dissecting the in vivo dynamics of transcription locking due to positive supercoiling buildup.
Palma CSD, Kandavalli V, Bahrudeen MNM, Minoia M, Chauhan V, Dash S, Ribeiro AS.
Palma CSD, et al. Among authors: bahrudeen mnm.
Biochim Biophys Acta Gene Regul Mech. 2020 May;1863(5):194515. doi: 10.1016/j.bbagrm.2020.194515. Epub 2020 Feb 27.
Biochim Biophys Acta Gene Regul Mech. 2020.
PMID: 32113983
Free article.
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Analytical kinetic model of native tandem promoters in E. coli.
Chauhan V, Bahrudeen MNM, Palma CSD, Baptista ISC, Almeida BLB, Dash S, Kandavalli V, Ribeiro AS.
Chauhan V, et al. Among authors: bahrudeen mnm.
PLoS Comput Biol. 2022 Jan 31;18(1):e1009824. doi: 10.1371/journal.pcbi.1009824. eCollection 2022 Jan.
PLoS Comput Biol. 2022.
PMID: 35100257
Free PMC article.
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Sequence-dependent model of genes with dual σ factor preference.
Baptista ISC, Kandavalli V, Chauhan V, Bahrudeen MNM, Almeida BLB, Palma CSD, Dash S, Ribeiro AS.
Baptista ISC, et al. Among authors: bahrudeen mnm.
Biochim Biophys Acta Gene Regul Mech. 2022 Apr;1865(3):194812. doi: 10.1016/j.bbagrm.2022.194812. Epub 2022 Mar 22.
Biochim Biophys Acta Gene Regul Mech. 2022.
PMID: 35338024
Free article.
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Alteration of DNA supercoiling serves as a trigger of short-term cold shock repressed genes of E. coli.
Dash S, Palma CSD, Baptista ISC, Almeida BLB, Bahrudeen MNM, Chauhan V, Jagadeesan R, Ribeiro AS.
Dash S, et al. Among authors: bahrudeen mnm.
Nucleic Acids Res. 2022 Aug 26;50(15):8512-8528. doi: 10.1093/nar/gkac643.
Nucleic Acids Res. 2022.
PMID: 35920318
Free PMC article.
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SRSF3 shapes the structure of miR-17-92 cluster RNA and promotes selective processing of miR-17 and miR-20a.
Ratnadiwakara M, Bahrudeen MN, Aikio E, Takabe P, Engel RM, Zahir Z, Jardé T, McMurrick PJ, Abud HE, Änkö ML.
Ratnadiwakara M, et al. Among authors: bahrudeen mn.
EMBO Rep. 2023 Jul 5;24(7):e56021. doi: 10.15252/embr.202256021. Epub 2023 Jun 12.
EMBO Rep. 2023.
PMID: 37306233
Free PMC article.
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