Bahrami-Samani E - Search Results

1

Computational challenges, tools, and resources for analyzing co- and post-transcriptional events in high throughput.

Bahrami-Samani E, Vo DT, de Araujo PR, Vogel C, Smith AD, Penalva LO, Uren PJ. Bahrami-Samani E, et al. Wiley Interdiscip Rev RNA. 2015 May-Jun;6(3):291-310. doi: 10.1002/wrna.1274. Epub 2014 Dec 16. Wiley Interdiscip Rev RNA. 2015. PMID: 25515586 Free PMC article. Review.

2

Site identification in high-throughput RNA-protein interaction data.

Uren PJ, Bahrami-Samani E, Burns SC, Qiao M, Karginov FV, Hodges E, Hannon GJ, Sanford JR, Penalva LO, Smith AD. Uren PJ, et al. Bioinformatics. 2012 Dec 1;28(23):3013-20. doi: 10.1093/bioinformatics/bts569. Epub 2012 Sep 28. Bioinformatics. 2012. PMID: 23024010 Free PMC article.

3

Leveraging cross-link modification events in CLIP-seq for motif discovery.

Bahrami-Samani E, Penalva LO, Smith AD, Uren PJ. Bahrami-Samani E, et al. Nucleic Acids Res. 2015 Jan;43(1):95-103. doi: 10.1093/nar/gku1288. Epub 2014 Dec 10. Nucleic Acids Res. 2015. PMID: 25505146 Free PMC article.

4

High-throughput analyses of hnRNP H1 dissects its multi-functional aspect.

Uren PJ, Bahrami-Samani E, de Araujo PR, Vogel C, Qiao M, Burns SC, Smith AD, Penalva LO. Uren PJ, et al. RNA Biol. 2016;13(4):400-11. doi: 10.1080/15476286.2015.1138030. Epub 2016 Jan 13. RNA Biol. 2016. PMID: 26760575 Free PMC article.

5

RNA-Binding Protein Musashi1 Is a Central Regulator of Adhesion Pathways in Glioblastoma.

Uren PJ, Vo DT, de Araujo PR, Pötschke R, Burns SC, Bahrami-Samani E, Qiao M, de Sousa Abreu R, Nakaya HI, Correa BR, Kühnöl C, Ule J, Martindale JL, Abdelmohsen K, Gorospe M, Smith AD, Penalva LO. Uren PJ, et al. Mol Cell Biol. 2015 Sep 1;35(17):2965-78. doi: 10.1128/MCB.00410-15. Epub 2015 Jun 22. Mol Cell Biol. 2015. PMID: 26100017 Free PMC article.

6

Transcriptional regulatory control of mammalian nephron progenitors revealed by multi-factor cistromic analysis and genetic studies.

O'Brien LL, Guo Q, Bahrami-Samani E, Park JS, Hasso SM, Lee YJ, Fang A, Kim AD, Guo J, Hong TM, Peterson KA, Lozanoff S, Raviram R, Ren B, Fogelgren B, Smith AD, Valouev A, McMahon AP. O'Brien LL, et al. Among authors: bahrami samani e. PLoS Genet. 2018 Jan 29;14(1):e1007181. doi: 10.1371/journal.pgen.1007181. eCollection 2018 Jan. PLoS Genet. 2018. PMID: 29377931 Free PMC article.

7

Discovery of Allele-Specific Protein-RNA Interactions in Human Transcriptomes.

Bahrami-Samani E, Xing Y. Bahrami-Samani E, et al. Am J Hum Genet. 2019 Mar 7;104(3):492-502. doi: 10.1016/j.ajhg.2019.01.018. Epub 2019 Feb 28. Am J Hum Genet. 2019. PMID: 30827501 Free PMC article.

8

Discover hidden splicing variations by mapping personal transcriptomes to personal genomes.

Stein S, Lu ZX, Bahrami-Samani E, Park JW, Xing Y. Stein S, et al. Nucleic Acids Res. 2015 Dec 15;43(22):10612-22. doi: 10.1093/nar/gkv1099. Epub 2015 Nov 17. Nucleic Acids Res. 2015. PMID: 26578562 Free PMC article.

9

Detecting Allele-Specific Alternative Splicing from Population-Scale RNA-Seq Data.

Demirdjian L, Xu Y, Bahrami-Samani E, Pan Y, Stein S, Xie Z, Park E, Wu YN, Xing Y. Demirdjian L, et al. Among authors: bahrami samani e. Am J Hum Genet. 2020 Sep 3;107(3):461-472. doi: 10.1016/j.ajhg.2020.07.005. Epub 2020 Aug 10. Am J Hum Genet. 2020. PMID: 32781045 Free PMC article.

10

αCP binding to a cytosine-rich subset of polypyrimidine tracts drives a novel pathway of cassette exon splicing in the mammalian transcriptome.

Ji X, Park JW, Bahrami-Samani E, Lin L, Duncan-Lewis C, Pherribo G, Xing Y, Liebhaber SA. Ji X, et al. Nucleic Acids Res. 2016 Mar 18;44(5):2283-97. doi: 10.1093/nar/gkw088. Epub 2016 Feb 20. Nucleic Acids Res. 2016. PMID: 26896798 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

17 results

Search Page