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Extrachromosomal oncogene amplification drives tumour evolution and genetic heterogeneity.
Turner KM, Deshpande V, Beyter D, Koga T, Rusert J, Lee C, Li B, Arden K, Ren B, Nathanson DA, Kornblum HI, Taylor MD, Kaushal S, Cavenee WK, Wechsler-Reya R, Furnari FB, Vandenberg SR, Rao PN, Wahl GM, Bafna V, Mischel PS. Turner KM, et al. Among authors: bafna v. Nature. 2017 Mar 2;543(7643):122-125. doi: 10.1038/nature21356. Epub 2017 Feb 8. Nature. 2017. PMID: 28178237 Free PMC article.
Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer.
Hon GC, Hawkins RD, Caballero OL, Lo C, Lister R, Pelizzola M, Valsesia A, Ye Z, Kuan S, Edsall LE, Camargo AA, Stevenson BJ, Ecker JR, Bafna V, Strausberg RL, Simpson AJ, Ren B. Hon GC, et al. Among authors: bafna v. Genome Res. 2012 Feb;22(2):246-58. doi: 10.1101/gr.125872.111. Epub 2011 Dec 7. Genome Res. 2012. PMID: 22156296 Free PMC article.
Diversity, Productivity, and Stability of an Industrial Microbial Ecosystem.
Beyter D, Tang PZ, Becker S, Hoang T, Bilgin D, Lim YW, Peterson TC, Mayfield S, Haerizadeh F, Shurin JB, Bafna V, McBride R. Beyter D, et al. Among authors: bafna v. Appl Environ Microbiol. 2016 Apr 4;82(8):2494-2505. doi: 10.1128/AEM.03965-15. Print 2016 Apr. Appl Environ Microbiol. 2016. PMID: 26896141 Free PMC article.
Identifying the favored mutation in a positive selective sweep.
Akbari A, Vitti JJ, Iranmehr A, Bakhtiari M, Sabeti PC, Mirarab S, Bafna V. Akbari A, et al. Among authors: bafna v. Nat Methods. 2018 Apr;15(4):279-282. doi: 10.1038/nmeth.4606. Epub 2018 Feb 19. Nat Methods. 2018. PMID: 29457793 Free PMC article.
193 results