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NetMatchStar: an enhanced Cytoscape network querying app.
Rinnone F, Micale G, Bonnici V, Bader GD, Shasha D, Ferro A, Pulvirenti A, Giugno R. Rinnone F, et al. Among authors: bader gd. F1000Res. 2015 Aug 5;4:479. doi: 10.12688/f1000research.6656.2. eCollection 2015. F1000Res. 2015. PMID: 26594341 Free PMC article.
NetMatch: a Cytoscape plugin for searching biological networks.
Ferro A, Giugno R, Pigola G, Pulvirenti A, Skripin D, Bader GD, Shasha D. Ferro A, et al. Among authors: bader gd. Bioinformatics. 2007 Apr 1;23(7):910-2. doi: 10.1093/bioinformatics/btm032. Epub 2007 Feb 3. Bioinformatics. 2007. PMID: 17277332
The Cytoscape app article collection.
Pico AR, Bader GD, Demchak B, Guitart Pla O, Hull T, Longabaugh W, Lopes C, Lotia S, Molenaar P, Montojo J, Morris JH, Ono K, Schwikowski B, Welker D, Ideker T. Pico AR, et al. Among authors: bader gd. F1000Res. 2014 Jul 1;3:138. doi: 10.12688/f1000research.4642.1. eCollection 2014. F1000Res. 2014. PMID: 25580224 Free PMC article.
The Cytoscape Automation app article collection.
Demchak B, Otasek D, Pico AR, Bader GD, Ono K, Settle B, Sage E, Morris JH, Longabaugh W, Lopes C, Kucera M, Treister A, Schwikowski B, Molenaar P, Ideker T. Demchak B, et al. Among authors: bader gd. F1000Res. 2018 Jun 20;7:800. doi: 10.12688/f1000research.15355.1. eCollection 2018. F1000Res. 2018. PMID: 29983926 Free PMC article.
scNetViz: from single cells to networks using Cytoscape.
Choudhary K, Meng EC, Diaz-Mejia JJ, Bader GD, Pico AR, Morris JH. Choudhary K, et al. Among authors: bader gd. F1000Res. 2021 Jun 7;10:ISCB Comm J-448. doi: 10.12688/f1000research.52460.1. eCollection 2021. F1000Res. 2021. PMID: 34912541 Free PMC article.
345 results