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Petabase-scale sequence alignment catalyses viral discovery.
Edgar RC, Taylor B, Lin V, Altman T, Barbera P, Meleshko D, Lohr D, Novakovsky G, Buchfink B, Al-Shayeb B, Banfield JF, de la Peña M, Korobeynikov A, Chikhi R, Babaian A. Edgar RC, et al. Among authors: babaian a. Nature. 2022 Feb;602(7895):142-147. doi: 10.1038/s41586-021-04332-2. Epub 2022 Jan 26. Nature. 2022. PMID: 35082445
Hybrids of RNA viruses and viroid-like elements replicate in fungi.
Forgia M, Navarro B, Daghino S, Cervera A, Gisel A, Perotto S, Aghayeva DN, Akinyuwa MF, Gobbi E, Zheludev IN, Edgar RC, Chikhi R, Turina M, Babaian A, Di Serio F, de la Peña M. Forgia M, et al. Among authors: babaian a. Nat Commun. 2023 May 5;14(1):2591. doi: 10.1038/s41467-023-38301-2. Nat Commun. 2023. PMID: 37147358 Free PMC article.
Viroid-like colonists of human microbiomes.
Zheludev IN, Edgar RC, Lopez-Galiano MJ, de la Peña M, Babaian A, Bhatt AS, Fire AZ. Zheludev IN, et al. Among authors: babaian a. bioRxiv [Preprint]. 2024 Jan 21:2024.01.20.576352. doi: 10.1101/2024.01.20.576352. bioRxiv. 2024. PMID: 38293115 Free PMC article. Preprint.
Synthetic modeling reveals HOXB genes are critical for the initiation and maintenance of human leukemia.
Kusakabe M, Sun AC, Tyshchenko K, Wong R, Nanda A, Shanna C, Gusscott S, Chavez EA, Lorzadeh A, Zhu A, Hill A, Hung S, Brown S, Babaian A, Wang X, Holt RA, Steidl C, Karsan A, Humphries RK, Eaves CJ, Hirst M, Weng AP. Kusakabe M, et al. Among authors: babaian a. Nat Commun. 2019 Jul 2;10(1):2913. doi: 10.1038/s41467-019-10510-8. Nat Commun. 2019. PMID: 31266935 Free PMC article.
Distinct isoform of FABP7 revealed by screening for retroelement-activated genes in diffuse large B-cell lymphoma.
Lock FE, Rebollo R, Miceli-Royer K, Gagnier L, Kuah S, Babaian A, Sistiaga-Poveda M, Lai CB, Nemirovsky O, Serrano I, Steidl C, Karimi MM, Mager DL. Lock FE, et al. Among authors: babaian a. Proc Natl Acad Sci U S A. 2014 Aug 26;111(34):E3534-43. doi: 10.1073/pnas.1405507111. Epub 2014 Aug 11. Proc Natl Acad Sci U S A. 2014. PMID: 25114248 Free PMC article.
The miR-185/PAK6 axis predicts therapy response and regulates survival of drug-resistant leukemic stem cells in CML.
Lin H, Rothe K, Chen M, Wu A, Babaian A, Yen R, Zeng J, Ruschmann J, Petriv OI, O'Neill K, Maetzig T, Knapp DJHF, Nakamichi N, Brinkman R, Birol I, Forrest DL, Hansen C, Humphries RK, Eaves CJ, Jiang X. Lin H, et al. Among authors: babaian a. Blood. 2020 Jul 30;136(5):596-609. doi: 10.1182/blood.2019003636. Blood. 2020. PMID: 32270193 Free PMC article.
46 results