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Public archiving of volume EM data.
Iudin A, Hartley M, Kleywegt GJ, Patwardhan A. Iudin A, et al. Methods Cell Biol. 2023;177:389-399. doi: 10.1016/bs.mcb.2023.02.002. Epub 2023 Mar 27. Methods Cell Biol. 2023. PMID: 37451775
REMBI: Recommended Metadata for Biological Images-enabling reuse of microscopy data in biology.
Sarkans U, Chiu W, Collinson L, Darrow MC, Ellenberg J, Grunwald D, Hériché JK, Iudin A, Martins GG, Meehan T, Narayan K, Patwardhan A, Russell MRG, Saibil HR, Strambio-De-Castillia C, Swedlow JR, Tischer C, Uhlmann V, Verkade P, Barlow M, Bayraktar O, Birney E, Catavitello C, Cawthorne C, Wagner-Conrad S, Duke E, Paul-Gilloteaux P, Gustin E, Harkiolaki M, Kankaanpää P, Lemberger T, McEntyre J, Moore J, Nicholls AW, Onami S, Parkinson H, Parsons M, Romanchikova M, Sofroniew N, Swoger J, Utz N, Voortman LM, Wong F, Zhang P, Kleywegt GJ, Brazma A. Sarkans U, et al. Nat Methods. 2021 Dec;18(12):1418-1422. doi: 10.1038/s41592-021-01166-8. Nat Methods. 2021. PMID: 34021280 Free PMC article.
Bringing Open Data to Whole Slide Imaging.
Besson S, Leigh R, Linkert M, Allan C, Burel JM, Carroll M, Gault D, Gozim R, Li S, Lindner D, Moore J, Moore W, Walczysko P, Wong F, Swedlow JR. Besson S, et al. Digit Pathol (2019). 2019 Apr;2019:3-10. doi: 10.1007/978-3-030-23937-4_1. Epub 2019 Jul 3. Digit Pathol (2019). 2019. PMID: 31579322 Free PMC article.
A call for public archives for biological image data.
Ellenberg J, Swedlow JR, Barlow M, Cook CE, Sarkans U, Patwardhan A, Brazma A, Birney E. Ellenberg J, et al. Nat Methods. 2018 Nov;15(11):849-854. doi: 10.1038/s41592-018-0195-8. Nat Methods. 2018. PMID: 30377375 Free PMC article.