BB/M004155/1/BB_/Biotechnology and Biological Sciences Research Council/United Kingdom[Grants and Funding] - Search Results

Year	Number of Results
2015	1
2016	1
2019	1
2020	1
2021	2
2022	2
2024	0

1

m⁶A modification of U6 snRNA modulates usage of two major classes of pre-mRNA 5' splice site.

Parker MT, Soanes BK, Kusakina J, Larrieu A, Knop K, Joy N, Breidenbach F, Sherwood AV, Barton GJ, Fica SM, Davies BH, Simpson GG. Parker MT, et al. Elife. 2022 Nov 21;11:e78808. doi: 10.7554/eLife.78808. Elife. 2022. PMID: 36409063 Free PMC article.

2

Chromosome evolution and the genetic basis of agronomically important traits in greater yam.

Bredeson JV, Lyons JB, Oniyinde IO, Okereke NR, Kolade O, Nnabue I, Nwadili CO, Hřibová E, Parker M, Nwogha J, Shu S, Carlson J, Kariba R, Muthemba S, Knop K, Barton GJ, Sherwood AV, Lopez-Montes A, Asiedu R, Jamnadass R, Muchugi A, Goodstein D, Egesi CN, Featherston J, Asfaw A, Simpson GG, Doležel J, Hendre PS, Van Deynze A, Kumar PL, Obidiegwu JE, Bhattacharjee R, Rokhsar DS. Bredeson JV, et al. Nat Commun. 2022 Apr 14;13(1):2001. doi: 10.1038/s41467-022-29114-w. Nat Commun. 2022. PMID: 35422045 Free PMC article.

3

Widespread premature transcription termination of Arabidopsis thaliana NLR genes by the spen protein FPA.

Parker MT, Knop K, Zacharaki V, Sherwood AV, Tomé D, Yu X, Martin PG, Beynon J, Michaels SD, Barton GJ, Simpson GG. Parker MT, et al. Elife. 2021 Apr 27;10:e65537. doi: 10.7554/eLife.65537. Elife. 2021. PMID: 33904405 Free PMC article.

4

2passtools: two-pass alignment using machine-learning-filtered splice junctions increases the accuracy of intron detection in long-read RNA sequencing.

Parker MT, Knop K, Barton GJ, Simpson GG. Parker MT, et al. Genome Biol. 2021 Mar 1;22(1):72. doi: 10.1186/s13059-021-02296-0. Genome Biol. 2021. PMID: 33648554 Free PMC article.

5

Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m⁶A modification.

Parker MT, Knop K, Sherwood AV, Schurch NJ, Mackinnon K, Gould PD, Hall AJ, Barton GJ, Simpson GG. Parker MT, et al. Elife. 2020 Jan 14;9:e49658. doi: 10.7554/eLife.49658. Elife. 2020. PMID: 31931956 Free PMC article.

6

How well do RNA-Seq differential gene expression tools perform in a complex eukaryote? A case study in Arabidopsis thaliana.

Froussios K, Schurch NJ, Mackinnon K, Gierliński M, Duc C, Simpson GG, Barton GJ. Froussios K, et al. Bioinformatics. 2019 Sep 15;35(18):3372-3377. doi: 10.1093/bioinformatics/btz089. Bioinformatics. 2019. PMID: 30726870 Free PMC article.

7

How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?

Schurch NJ, Schofield P, Gierliński M, Cole C, Sherstnev A, Singh V, Wrobel N, Gharbi K, Simpson GG, Owen-Hughes T, Blaxter M, Barton GJ. Schurch NJ, et al. RNA. 2016 Jun;22(6):839-51. doi: 10.1261/rna.053959.115. Epub 2016 Mar 28. RNA. 2016. PMID: 27022035 Free PMC article.

8

The Arabidopsis epitranscriptome.

Fray RG, Simpson GG. Fray RG, et al. Curr Opin Plant Biol. 2015 Oct;27:17-21. doi: 10.1016/j.pbi.2015.05.015. Epub 2015 Jun 3. Curr Opin Plant Biol. 2015. PMID: 26048078 Free article. Review.

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