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FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices.
Lerner E, Barth A, Hendrix J, Ambrose B, Birkedal V, Blanchard SC, Börner R, Sung Chung H, Cordes T, Craggs TD, Deniz AA, Diao J, Fei J, Gonzalez RL, Gopich IV, Ha T, Hanke CA, Haran G, Hatzakis NS, Hohng S, Hong SC, Hugel T, Ingargiola A, Joo C, Kapanidis AN, Kim HD, Laurence T, Lee NK, Lee TH, Lemke EA, Margeat E, Michaelis J, Michalet X, Myong S, Nettels D, Peulen TO, Ploetz E, Razvag Y, Robb NC, Schuler B, Soleimaninejad H, Tang C, Vafabakhsh R, Lamb DC, Seidel CA, Weiss S. Lerner E, et al. Among authors: borner r. Elife. 2021 Mar 29;10:e60416. doi: 10.7554/eLife.60416. Elife. 2021. PMID: 33779550 Free PMC article. Review.
A blind benchmark of analysis tools to infer kinetic rate constants from single-molecule FRET trajectories.
Götz M, Barth A, Bohr SS, Börner R, Chen J, Cordes T, Erie DA, Gebhardt C, Hadzic MCAS, Hamilton GL, Hatzakis NS, Hugel T, Kisley L, Lamb DC, de Lannoy C, Mahn C, Dunukara D, de Ridder D, Sanabria H, Schimpf J, Seidel CAM, Sigel RKO, Sletfjerding MB, Thomsen J, Vollmar L, Wanninger S, Weninger KR, Xu P, Schmid S. Götz M, et al. Among authors: borner r. Nat Commun. 2022 Sep 14;13(1):5402. doi: 10.1038/s41467-022-33023-3. Nat Commun. 2022. PMID: 36104339 Free PMC article.
A new twist on PIFE: photoisomerisation-related fluorescence enhancement.
Ploetz E, Ambrose B, Barth A, Börner R, Erichson F, Kapanidis AN, Kim HD, Levitus M, Lohman TM, Mazumder A, Rueda DS, Steffen FD, Cordes T, Magennis SW, Lerner E. Ploetz E, et al. Among authors: borner r. ArXiv [Preprint]. 2023 Jul 10:arXiv:2302.12455v2. ArXiv. 2023. PMID: 36866225 Free PMC article. Updated. Preprint.
A new twist on PIFE: photoisomerisation-related fluorescence enhancement.
Ploetz E, Ambrose B, Barth A, Börner R, Erichson F, Kapanidis AN, Kim HD, Levitus M, Lohman TM, Mazumder A, Rueda DS, Steffen FD, Cordes T, Magennis SW, Lerner E. Ploetz E, et al. Among authors: borner r. Methods Appl Fluoresc. 2023 Oct 12;12(1):012001. doi: 10.1088/2050-6120/acfb58. Methods Appl Fluoresc. 2023. PMID: 37726007 Free PMC article. Review.
Reply to: On the statistical foundation of a recent single molecule FRET benchmark.
Götz M, Barth A, Bohr SS, Börner R, Chen J, Cordes T, Erie DA, Gebhardt C, Hadzic MCAS, Hamilton GL, Hatzakis NS, Hugel T, Kisley L, Lamb DC, de Lannoy C, Mahn C, Dunukara D, de Ridder D, Sanabria H, Schimpf J, Seidel CAM, Sigel RKO, Sletfjerding MB, Thomsen J, Vollmar L, Wanninger S, Weninger KR, Xu P, Schmid S. Götz M, et al. Among authors: borner r. Nat Commun. 2024 Apr 30;15(1):3626. doi: 10.1038/s41467-024-47734-2. Nat Commun. 2024. PMID: 38688911 Free PMC article. No abstract available.
BOBA FRET: bootstrap-based analysis of single-molecule FRET data.
König SL, Hadzic M, Fiorini E, Börner R, Kowerko D, Blanckenhorn WU, Sigel RK. König SL, et al. Among authors: borner r. PLoS One. 2013 Dec 27;8(12):e84157. doi: 10.1371/journal.pone.0084157. eCollection 2013. PLoS One. 2013. PMID: 24386343 Free PMC article.
70 results