Azevedo V - Search Results

1

An issue of concern: unique truncated ORF8 protein variants of SARS-CoV-2.

Hassan SS, Kodakandla V, Redwan EM, Lundstrom K, Pal Choudhury P, Abd El-Aziz TM, Takayama K, Kandimalla R, Lal A, Serrano-Aroca Á, Azad GK, Aljabali AAA, Palù G, Chauhan G, Adadi P, Tambuwala M, Brufsky AM, Baetas-da-Cruz W, Barh D, Azevedo V, Bazan NG, Andrade BS, Santana Silva RJ, Uversky VN. Hassan SS, et al. Among authors: azevedo v. PeerJ. 2022 Mar 21;10:e13136. doi: 10.7717/peerj.13136. eCollection 2022. PeerJ. 2022. PMID: 35341060 Free PMC article.

2

Quality of prokaryote genome assembly: indispensable issues of factors affecting prokaryote genome assembly quality.

Carneiro AR, Ramos RT, Barbosa HP, Schneider MP, Barh D, Azevedo V, Silva A. Carneiro AR, et al. Among authors: azevedo v. Gene. 2012 Sep 1;505(2):365-7. doi: 10.1016/j.gene.2012.06.016. Epub 2012 Jun 18. Gene. 2012. PMID: 22721771

3

Simplifier: a web tool to eliminate redundant NGS contigs.

Ramos RT, Carneiro AR, Azevedo V, Schneider MP, Barh D, Silva A. Ramos RT, et al. Among authors: azevedo v. Bioinformation. 2012;8(20):996-9. doi: 10.6026/97320630008996. Epub 2012 Oct 13. Bioinformation. 2012. PMID: 23275695 Free PMC article.

4

Differential Exoproteome analysis of two corynebacterium pseudotuberculosis biovar ovis strains isolated from goat (1002) and sheep (C231).

Silva WM, Seyffert N, Ciprandi A, Santos AV, Castro TL, Pacheco LG, Barh D, Le Loir Y, Pimenta AM, Miyoshi A, Silva A, Azevedo V. Silva WM, et al. Among authors: azevedo v. Curr Microbiol. 2013 Oct;67(4):460-5. doi: 10.1007/s00284-013-0388-4. Epub 2013 May 23. Curr Microbiol. 2013. PMID: 23699973

5

Graphical contig analyzer for all sequencing platforms (G4ALL): a new stand-alone tool for finishing and draft generation of bacterial genomes.

Ramos RT, Carneiro AR, Caracciolo PH, Azevedo V, Schneider MP, Barh D, Silva A. Ramos RT, et al. Among authors: azevedo v. Bioinformation. 2013 Jun 29;9(11):599-604. doi: 10.6026/97320630009599. Print 2013. Bioinformation. 2013. PMID: 23888102 Free PMC article.

6

An improved interolog mapping-based computational prediction of protein-protein interactions with increased network coverage.

Folador EL, Hassan SS, Lemke N, Barh D, Silva A, Ferreira RS, Azevedo V. Folador EL, et al. Among authors: azevedo v. Integr Biol (Camb). 2014 Nov;6(11):1080-7. doi: 10.1039/c4ib00136b. Integr Biol (Camb). 2014. PMID: 25209055

7

The conserved mitochondrial gene distribution in relatives of Turritopsis nutricula, an immortal jellyfish.

Devarapalli P, Kumavath RN, Barh D, Azevedo V. Devarapalli P, et al. Among authors: azevedo v. Bioinformation. 2014 Sep 30;10(9):586-91. doi: 10.6026/97320630010586. eCollection 2014. Bioinformation. 2014. PMID: 25352727 Free PMC article.

8

In Silico Protein-Protein Interactions: Avoiding Data and Method Biases Over Sensitivity and Specificity.

Folador EL, de Oliveira Junior AF, Tiwari S, Jamal SB, Ferreira RS, Barh D, Ghosh P, Silva A, Azevedo V. Folador EL, et al. Among authors: azevedo v. Curr Protein Pept Sci. 2015;16(8):689-700. doi: 10.2174/1389203716666150505235437. Curr Protein Pept Sci. 2015. PMID: 25961403 Review.

9

In silico identification of essential proteins in Corynebacterium pseudotuberculosis based on protein-protein interaction networks.

Folador EL, de Carvalho PV, Silva WM, Ferreira RS, Silva A, Gromiha M, Ghosh P, Barh D, Azevedo V, Röttger R. Folador EL, et al. Among authors: azevedo v. BMC Syst Biol. 2016 Nov 4;10(1):103. doi: 10.1186/s12918-016-0346-4. BMC Syst Biol. 2016. PMID: 27814699 Free PMC article.

10

miRsig: a consensus-based network inference methodology to identify pan-cancer miRNA-miRNA interaction signatures.

Nalluri JJ, Barh D, Azevedo V, Ghosh P. Nalluri JJ, et al. Among authors: azevedo v. Sci Rep. 2017 Jan 3;7:39684. doi: 10.1038/srep39684. Sci Rep. 2017. PMID: 28045122 Free PMC article.

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