Ay F - Search Results

1

Comparative 3D genome organization in apicomplexan parasites.

Bunnik EM, Venkat A, Shao J, McGovern KE, Batugedara G, Worth D, Prudhomme J, Lapp SA, Andolina C, Ross LS, Lawres L, Brady D, Sinnis P, Nosten F, Fidock DA, Wilson EH, Tewari R, Galinski MR, Ben Mamoun C, Ay F, Le Roch KG. Bunnik EM, et al. Among authors: ay f. Proc Natl Acad Sci U S A. 2019 Feb 19;116(8):3183-3192. doi: 10.1073/pnas.1810815116. Epub 2019 Feb 5. Proc Natl Acad Sci U S A. 2019. PMID: 30723152 Free PMC article.

2

A double-negative thymocyte-specific enhancer augments Notch1 signaling to direct early T cell progenitor expansion, lineage restriction and β-selection.

Kashiwagi M, Figueroa DS, Ay F, Morgan BA, Georgopoulos K. Kashiwagi M, et al. Among authors: ay f. Nat Immunol. 2022 Nov;23(11):1628-1643. doi: 10.1038/s41590-022-01322-y. Epub 2022 Oct 31. Nat Immunol. 2022. PMID: 36316479 Free PMC article.

3

Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression.

Ay F, Bunnik EM, Varoquaux N, Bol SM, Prudhomme J, Vert JP, Noble WS, Le Roch KG. Ay F, et al. Genome Res. 2014 Jun;24(6):974-88. doi: 10.1101/gr.169417.113. Epub 2014 Mar 26. Genome Res. 2014. PMID: 24671853 Free PMC article.

4

Multiple dimensions of epigenetic gene regulation in the malaria parasite Plasmodium falciparum: gene regulation via histone modifications, nucleosome positioning and nuclear architecture in P. falciparum.

Ay F, Bunnik EM, Varoquaux N, Vert JP, Noble WS, Le Roch KG. Ay F, et al. Bioessays. 2015 Feb;37(2):182-94. doi: 10.1002/bies.201400145. Epub 2014 Nov 13. Bioessays. 2015. PMID: 25394267 Free PMC article.

5

Plasmodium knowlesi: a superb in vivo nonhuman primate model of antigenic variation in malaria.

Galinski MR, Lapp SA, Peterson MS, Ay F, Joyner CJ, LE Roch KG, Fonseca LL, Voit EO; MAHPIC CONSORTIUM. Galinski MR, et al. Among authors: ay f. Parasitology. 2018 Jan;145(1):85-100. doi: 10.1017/S0031182017001135. Epub 2017 Jul 17. Parasitology. 2018. PMID: 28712361 Free PMC article. Review.

6

PacBio assembly of a Plasmodium knowlesi genome sequence with Hi-C correction and manual annotation of the SICAvar gene family.

Lapp SA, Geraldo JA, Chien JT, Ay F, Pakala SB, Batugedara G, Humphrey J; MaHPIC consortium; DeBARRY JD, Le Roch KG, Galinski MR, Kissinger JC. Lapp SA, et al. Among authors: ay f. Parasitology. 2018 Jan;145(1):71-84. doi: 10.1017/S0031182017001329. Epub 2017 Jul 19. Parasitology. 2018. PMID: 28720171 Free PMC article.

7

Changes in genome organization of parasite-specific gene families during the Plasmodium transmission stages.

Bunnik EM, Cook KB, Varoquaux N, Batugedara G, Prudhomme J, Cort A, Shi L, Andolina C, Ross LS, Brady D, Fidock DA, Nosten F, Tewari R, Sinnis P, Ay F, Vert JP, Noble WS, Le Roch KG. Bunnik EM, et al. Among authors: ay f. Nat Commun. 2018 May 15;9(1):1910. doi: 10.1038/s41467-018-04295-5. Nat Commun. 2018. PMID: 29765020 Free PMC article.

8

Third-generation sequencing revises the molecular karyotype for Toxoplasma gondii and identifies emerging copy number variants in sexual recombinants.

Xia J, Venkat A, Bainbridge RE, Reese ML, Le Roch KG, Ay F, Boyle JP. Xia J, et al. Among authors: ay f. Genome Res. 2021 May;31(5):834-851. doi: 10.1101/gr.262816.120. Epub 2021 Apr 27. Genome Res. 2021. PMID: 33906962 Free PMC article.

9

Clinical recovery of Macaca fascicularis infected with Plasmodium knowlesi.

Peterson MS, Joyner CJ, Brady JA, Wood JS, Cabrera-Mora M, Saney CL, Fonseca LL, Cheng WT, Jiang J, Lapp SA, Soderberg SR, Nural MV, Humphrey JC, Hankus A, Machiah D, Karpuzoglu E, DeBarry JD; MaHPIC-Consortium; Tirouvanziam R, Kissinger JC, Moreno A, Gumber S, Voit EO, Gutiérrez JB, Cordy RJ, Galinski MR. Peterson MS, et al. Malar J. 2021 Dec 30;20(1):486. doi: 10.1186/s12936-021-03925-6. Malar J. 2021. PMID: 34969401 Free PMC article.

10

Chromatin structure and var2csa - a tango in regulation of var gene expression in the human malaria parasite, Plasmodium falciparum?

Lenz T, Zhang X, Chakraborty A, Ardakany AR, Prudhomme J, Ay F, Deitsch K, Le Roch KG. Lenz T, et al. Among authors: ay f. bioRxiv [Preprint]. 2024 Feb 13:2024.02.13.580059. doi: 10.1101/2024.02.13.580059. bioRxiv. 2024. PMID: 38405848 Free PMC article. Preprint.

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