Avarre JC - Search Results

1

Aquaculture at the crossroads of global warming and antimicrobial resistance.

Reverter M, Sarter S, Caruso D, Avarre JC, Combe M, Pepey E, Pouyaud L, Vega-Heredía S, de Verdal H, Gozlan RE. Reverter M, et al. Among authors: avarre jc. Nat Commun. 2020 Apr 20;11(1):1870. doi: 10.1038/s41467-020-15735-6. Nat Commun. 2020. PMID: 32312964 Free PMC article.

2

Application of the FTA elute card coupled with visual colorimetric loop-mediated isothermal amplification for the rapid diagnosis of Streptococcus agalactiae in farmed tilapia (Oreochromis niloticus).

Pepey E, Taukhid T, Keck N, Lusiastuti A, Avarre JC, Sundari G, Sarter S, Caruso D. Pepey E, et al. Among authors: avarre jc. J Fish Dis. 2021 May;44(5):505-512. doi: 10.1111/jfd.13337. Epub 2021 Jan 24. J Fish Dis. 2021. PMID: 33486792

3

Investigation of Cyprinid herpesvirus-3 genetic diversity by a multi-locus variable number of tandem repeats analysis.

Avarre JC, Madeira JP, Santika A, Zainun Z, Baud M, Cabon J, Caruso D, Castric J, Bigarré L, Engelsma M, Maskur M. Avarre JC, et al. J Virol Methods. 2011 May;173(2):320-7. doi: 10.1016/j.jviromet.2011.03.002. Epub 2011 Mar 8. J Virol Methods. 2011. PMID: 21392536

4

Rapid detection and identification of nontuberculous mycobacterial pathogens in fish by using high-resolution melting analysis.

Phung TN, Caruso D, Godreuil S, Keck N, Vallaeys T, Avarre JC. Phung TN, et al. Among authors: avarre jc. Appl Environ Microbiol. 2013 Dec;79(24):7837-45. doi: 10.1128/AEM.00822-13. Epub 2013 Oct 11. Appl Environ Microbiol. 2013. PMID: 24123734 Free PMC article.

5

Targeted genomic enrichment and sequencing of CyHV-3 from carp tissues confirms low nucleotide diversity and mixed genotype infections.

Hammoumi S, Vallaeys T, Santika A, Leleux P, Borzym E, Klopp C, Avarre JC. Hammoumi S, et al. Among authors: avarre jc. PeerJ. 2016 Sep 27;4:e2516. doi: 10.7717/peerj.2516. eCollection 2016. PeerJ. 2016. PMID: 27703859 Free PMC article.

6

Cyprinid herpesvirus 3 Evolves In Vitro through an Assemblage of Haplotypes that Alternatively Become Dominant or Under-Represented.

Klafack S, Fiston-Lavier AS, Bergmann SM, Hammoumi S, Schröder L, Fuchs W, Lusiastuti A, Lee PY, Heredia SV; Master student consortium; Gosselin-Grenet AS, Avarre JC. Klafack S, et al. Among authors: avarre jc. Viruses. 2019 Aug 15;11(8):754. doi: 10.3390/v11080754. Viruses. 2019. PMID: 31443175 Free PMC article.

7

Contribution of Next-Generation Sequencing to Aquatic and Fish Virology.

Nkili-Meyong AA, Bigarré L, Labouba I, Vallaeys T, Avarre JC, Berthet N. Nkili-Meyong AA, et al. Among authors: avarre jc. Intervirology. 2016;59(5-6):285-300. doi: 10.1159/000477808. Epub 2017 Jul 1. Intervirology. 2016. PMID: 28668959 Free article.

8

A European epidemiological survey of Vibrio splendidus clade shows unexplored diversity and massive exchange of virulence factors.

Nasfi H, Travers MA, de Lorgeril J, Habib C, Sannie T, Sorieul L, Gerard J, Avarre JC, Haffner P, Tourbiez D, Renault T, Furones D, Roque A, Pruzzo C, Cheslett D, Gdoura R, Vallaeys T. Nasfi H, et al. Among authors: avarre jc. World J Microbiol Biotechnol. 2015 Mar;31(3):461-75. doi: 10.1007/s11274-015-1800-y. Epub 2015 Jan 14. World J Microbiol Biotechnol. 2015. PMID: 25586509

9

Development of a lab-made microarray for analyzing the genetic diversity of nitrogen fixing symbionts Sinorhizobium meliloti and Sinorhizobium medicae.

Bailly X, Béna G, Lenief V, de Lajudie P, Avarre JC. Bailly X, et al. Among authors: avarre jc. J Microbiol Methods. 2006 Oct;67(1):114-24. doi: 10.1016/j.mimet.2006.03.006. Epub 2006 Apr 19. J Microbiol Methods. 2006. PMID: 16626823

10

Hybridization of genomic DNA to microarrays: a challenge for the analysis of environmental samples.

Avarre JC, de Lajudie P, Béna G. Avarre JC, et al. J Microbiol Methods. 2007 May;69(2):242-8. doi: 10.1016/j.mimet.2006.11.007. Epub 2006 Dec 26. J Microbiol Methods. 2007. PMID: 17188770 Review.

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