Asnicar F - Search Results

1

Exploring the relationship between social jetlag with gut microbial composition, diet and cardiometabolic health, in the ZOE PREDICT 1 cohort.

Bermingham KM, Stensrud S, Asnicar F, Valdes AM, Franks PW, Wolf J, Hadjigeorgiou G, Davies R, Spector TD, Segata N, Berry SE, Hall WL. Bermingham KM, et al. Among authors: asnicar f. Eur J Nutr. 2023 Dec;62(8):3135-3147. doi: 10.1007/s00394-023-03204-x. Epub 2023 Aug 2. Eur J Nutr. 2023. PMID: 37528259 Free PMC article.

2

Compact graphical representation of phylogenetic data and metadata with GraPhlAn.

Asnicar F, Weingart G, Tickle TL, Huttenhower C, Segata N. Asnicar F, et al. PeerJ. 2015 Jun 18;3:e1029. doi: 10.7717/peerj.1029. eCollection 2015. PeerJ. 2015. PMID: 26157614 Free PMC article.

3

Strain-level microbial epidemiology and population genomics from shotgun metagenomics.

Scholz M, Ward DV, Pasolli E, Tolio T, Zolfo M, Asnicar F, Truong DT, Tett A, Morrow AL, Segata N. Scholz M, et al. Among authors: asnicar f. Nat Methods. 2016 May;13(5):435-8. doi: 10.1038/nmeth.3802. Epub 2016 Mar 21. Nat Methods. 2016. PMID: 26999001

4

Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling.

Asnicar F, Manara S, Zolfo M, Truong DT, Scholz M, Armanini F, Ferretti P, Gorfer V, Pedrotti A, Tett A, Segata N. Asnicar F, et al. mSystems. 2017 Jan 17;2(1):e00164-16. doi: 10.1128/mSystems.00164-16. eCollection 2017 Jan-Feb. mSystems. 2017. PMID: 28144631 Free PMC article.

5

Profiling microbial strains in urban environments using metagenomic sequencing data.

Zolfo M, Asnicar F, Manghi P, Pasolli E, Tett A, Segata N. Zolfo M, et al. Among authors: asnicar f. Biol Direct. 2018 May 9;13(1):9. doi: 10.1186/s13062-018-0211-z. Biol Direct. 2018. PMID: 29743119 Free PMC article.

6

Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle.

Pasolli E, Asnicar F, Manara S, Zolfo M, Karcher N, Armanini F, Beghini F, Manghi P, Tett A, Ghensi P, Collado MC, Rice BL, DuLong C, Morgan XC, Golden CD, Quince C, Huttenhower C, Segata N. Pasolli E, et al. Among authors: asnicar f. Cell. 2019 Jan 24;176(3):649-662.e20. doi: 10.1016/j.cell.2019.01.001. Epub 2019 Jan 17. Cell. 2019. PMID: 30661755 Free PMC article.

7

Genomic and metagenomic insights into the microbial community of a thermal spring.

Pedron R, Esposito A, Bianconi I, Pasolli E, Tett A, Asnicar F, Cristofolini M, Segata N, Jousson O. Pedron R, et al. Among authors: asnicar f. Microbiome. 2019 Jan 23;7(1):8. doi: 10.1186/s40168-019-0625-6. Microbiome. 2019. PMID: 30674352 Free PMC article.

8

Detecting contamination in viromes using ViromeQC.

Zolfo M, Pinto F, Asnicar F, Manghi P, Tett A, Bushman FD, Segata N. Zolfo M, et al. Among authors: asnicar f. Nat Biotechnol. 2019 Dec;37(12):1408-1412. doi: 10.1038/s41587-019-0334-5. Nat Biotechnol. 2019. PMID: 31748692 No abstract available.

9

Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species.

Manara S, Asnicar F, Beghini F, Bazzani D, Cumbo F, Zolfo M, Nigro E, Karcher N, Manghi P, Metzger MI, Pasolli E, Segata N. Manara S, et al. Among authors: asnicar f. Genome Biol. 2019 Dec 28;20(1):299. doi: 10.1186/s13059-019-1923-9. Genome Biol. 2019. PMID: 31883524 Free PMC article.

10

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0.

Asnicar F, Thomas AM, Beghini F, Mengoni C, Manara S, Manghi P, Zhu Q, Bolzan M, Cumbo F, May U, Sanders JG, Zolfo M, Kopylova E, Pasolli E, Knight R, Mirarab S, Huttenhower C, Segata N. Asnicar F, et al. Nat Commun. 2020 May 19;11(1):2500. doi: 10.1038/s41467-020-16366-7. Nat Commun. 2020. PMID: 32427907 Free PMC article.

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