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Evolution of cisplatin resistance through coordinated metabolic reprogramming of the cellular reductive state.
Br J Cancer. 2023 Jun;128(11):2013-2024. doi: 10.1038/s41416-023-02253-7. Epub 2023 Apr 3.
Br J Cancer. 2023.
PMID: 37012319
Free PMC article.
A general calculus of fitness landscapes finds genes under selection in cancers.
Hsu TK, Asmussen J, Koire A, Choi BK, Gadhikar MA, Huh E, Lin CH, Konecki DM, Kim YW, Pickering CR, Kimmel M, Donehower LA, Frederick MJ, Myers JN, Katsonis P, Lichtarge O.
Hsu TK, et al.
Genome Res. 2022 May;32(5):916-929. doi: 10.1101/gr.275811.121. Epub 2022 Mar 17.
Genome Res. 2022.
PMID: 35301263
Free PMC article.
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EPIMUTESTR: a nearest neighbor machine learning approach to predict cancer driver genes from the evolutionary action of coding variants.
Parvandeh S, Donehower LA, Panagiotis K, Hsu TK, Asmussen JK, Lee K, Lichtarge O.
Parvandeh S, et al. Among authors: asmussen jk.
Nucleic Acids Res. 2022 Jul 8;50(12):e70. doi: 10.1093/nar/gkac215.
Nucleic Acids Res. 2022.
PMID: 35412634
Free PMC article.
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Functional variants identify sex-specific genes and pathways in Alzheimer's Disease.
Bourquard T, Lee K, Al-Ramahi I, Pham M, Shapiro D, Lagisetty Y, Soleimani S, Mota S, Wilhelm K, Samieinasab M, Kim YW, Huh E, Asmussen J, Katsonis P, Botas J, Lichtarge O.
Bourquard T, et al.
Nat Commun. 2023 May 13;14(1):2765. doi: 10.1038/s41467-023-38374-z.
Nat Commun. 2023.
PMID: 37179358
Free PMC article.
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Evolutionary Action-Machine Learning Model Identifies Candidate Genes Associated With Early-Onset Coronary Artery Disease.
Shapiro D, Lee K, Asmussen J, Bourquard T, Lichtarge O.
Shapiro D, et al.
J Am Heart Assoc. 2023 Sep 5;12(17):e029103. doi: 10.1161/JAHA.122.029103. Epub 2023 Aug 29.
J Am Heart Assoc. 2023.
PMID: 37642027
Free PMC article.
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