Ashworth J - Search Results

1

Pan-transcriptomic analysis identifies coordinated and orthologous functional modules in the diatoms Thalassiosira pseudonana and Phaeodactylum tricornutum.

Ashworth J, Turkarslan S, Harris M, Orellana MV, Baliga NS. Ashworth J, et al. Mar Genomics. 2016 Apr;26:21-8. doi: 10.1016/j.margen.2015.10.011. Epub 2015 Nov 10. Mar Genomics. 2016. PMID: 26560047

2

Genome-wide diel growth state transitions in the diatom Thalassiosira pseudonana.

Ashworth J, Coesel S, Lee A, Armbrust EV, Orellana MV, Baliga NS. Ashworth J, et al. Proc Natl Acad Sci U S A. 2013 Apr 30;110(18):7518-23. doi: 10.1073/pnas.1300962110. Epub 2013 Apr 17. Proc Natl Acad Sci U S A. 2013. PMID: 23596211 Free PMC article.

3

Inference of expanded Lrp-like feast/famine transcription factor targets in a non-model organism using protein structure-based prediction.

Ashworth J, Plaisier CL, Lo FY, Reiss DJ, Baliga NS. Ashworth J, et al. PLoS One. 2014 Sep 25;9(9):e107863. doi: 10.1371/journal.pone.0107863. eCollection 2014. PLoS One. 2014. PMID: 25255272 Free PMC article.

4

Structure-based predictions broadly link transcription factor mutations to gene expression changes in cancers.

Ashworth J, Bernard B, Reynolds S, Plaisier CL, Shmulevich I, Baliga NS. Ashworth J, et al. Nucleic Acids Res. 2014 Dec 1;42(21):12973-83. doi: 10.1093/nar/gku1031. Epub 2014 Nov 5. Nucleic Acids Res. 2014. PMID: 25378323 Free PMC article.

5

Evolution of context dependent regulation by expansion of feast/famine regulatory proteins.

Plaisier CL, Lo FY, Ashworth J, Brooks AN, Beer KD, Kaur A, Pan M, Reiss DJ, Facciotti MT, Baliga NS. Plaisier CL, et al. Among authors: ashworth j. BMC Syst Biol. 2014 Nov 14;8:122. doi: 10.1186/s12918-014-0122-2. BMC Syst Biol. 2014. PMID: 25394904 Free PMC article.

6

Reverse engineering systems models of regulation: discovery, prediction and mechanisms.

Ashworth J, Wurtmann EJ, Baliga NS. Ashworth J, et al. Curr Opin Biotechnol. 2012 Aug;23(4):598-603. doi: 10.1016/j.copbio.2011.12.005. Epub 2011 Dec 28. Curr Opin Biotechnol. 2012. PMID: 22209016 Free PMC article. Review.

7

Phytosterol biosynthesis and production by diatoms (Bacillariophyceae).

Jaramillo-Madrid AC, Ashworth J, Fabris M, Ralph PJ. Jaramillo-Madrid AC, et al. Among authors: ashworth j. Phytochemistry. 2019 Jul;163:46-57. doi: 10.1016/j.phytochem.2019.03.018. Epub 2019 Apr 19. Phytochemistry. 2019. PMID: 31005802 Review.

8

Rare variants in neuronal excitability genes influence risk for bipolar disorder.

Ament SA, Szelinger S, Glusman G, Ashworth J, Hou L, Akula N, Shekhtman T, Badner JA, Brunkow ME, Mauldin DE, Stittrich AB, Rouleau K, Detera-Wadleigh SD, Nurnberger JI Jr, Edenberg HJ, Gershon ES, Schork N; Bipolar Genome Study; Price ND, Gelinas R, Hood L, Craig D, McMahon FJ, Kelsoe JR, Roach JC. Ament SA, et al. Among authors: ashworth j. Proc Natl Acad Sci U S A. 2015 Mar 17;112(11):3576-81. doi: 10.1073/pnas.1424958112. Epub 2015 Feb 17. Proc Natl Acad Sci U S A. 2015. PMID: 25730879 Free PMC article.

9

Thermodynamics of DNA target site recognition by homing endonucleases.

Eastberg JH, McConnell Smith A, Zhao L, Ashworth J, Shen BW, Stoddard BL. Eastberg JH, et al. Among authors: ashworth j. Nucleic Acids Res. 2007;35(21):7209-21. doi: 10.1093/nar/gkm867. Epub 2007 Oct 18. Nucleic Acids Res. 2007. PMID: 17947319 Free PMC article.

10

Reprogramming homing endonuclease specificity through computational design and directed evolution.

Thyme SB, Boissel SJ, Arshiya Quadri S, Nolan T, Baker DA, Park RU, Kusak L, Ashworth J, Baker D. Thyme SB, et al. Among authors: ashworth j. Nucleic Acids Res. 2014 Feb;42(4):2564-76. doi: 10.1093/nar/gkt1212. Epub 2013 Nov 21. Nucleic Acids Res. 2014. PMID: 24270794 Free PMC article.

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