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Genome sequence of Aspergillus luchuensis NBRC 4314.
Yamada O, Machida M, Hosoyama A, Goto M, Takahashi T, Futagami T, Yamagata Y, Takeuchi M, Kobayashi T, Koike H, Abe K, Asai K, Arita M, Fujita N, Fukuda K, Higa KI, Horikawa H, Ishikawa T, Jinno K, Kato Y, Kirimura K, Mizutani O, Nakasone K, Sano M, Shiraishi Y, Tsukahara M, Gomi K. Yamada O, et al. Among authors: asai k. DNA Res. 2016 Dec;23(6):507-515. doi: 10.1093/dnares/dsw032. Epub 2016 Sep 20. DNA Res. 2016. PMID: 27651094 Free PMC article.
Modeling splicing sites with pairwise correlations.
Arita M, Tsuda K, Asai K. Arita M, et al. Among authors: asai k. Bioinformatics. 2002;18 Suppl 2:S27-34. doi: 10.1093/bioinformatics/18.suppl_2.s27. Bioinformatics. 2002. PMID: 12385980
Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus.
Nierman WC, Pain A, Anderson MJ, Wortman JR, Kim HS, Arroyo J, Berriman M, Abe K, Archer DB, Bermejo C, Bennett J, Bowyer P, Chen D, Collins M, Coulsen R, Davies R, Dyer PS, Farman M, Fedorova N, Fedorova N, Feldblyum TV, Fischer R, Fosker N, Fraser A, García JL, García MJ, Goble A, Goldman GH, Gomi K, Griffith-Jones S, Gwilliam R, Haas B, Haas H, Harris D, Horiuchi H, Huang J, Humphray S, Jiménez J, Keller N, Khouri H, Kitamoto K, Kobayashi T, Konzack S, Kulkarni R, Kumagai T, Lafon A, Latgé JP, Li W, Lord A, Lu C, Majoros WH, May GS, Miller BL, Mohamoud Y, Molina M, Monod M, Mouyna I, Mulligan S, Murphy L, O'Neil S, Paulsen I, Peñalva MA, Pertea M, Price C, Pritchard BL, Quail MA, Rabbinowitsch E, Rawlins N, Rajandream MA, Reichard U, Renauld H, Robson GD, Rodriguez de Córdoba S, Rodríguez-Peña JM, Ronning CM, Rutter S, Salzberg SL, Sanchez M, Sánchez-Ferrero JC, Saunders D, Seeger K, Squares R, Squares S, Takeuchi M, Tekaia F, Turner G, Vazquez de Aldana CR, Weidman J, White O, Woodward J, Yu JH, Fraser C, Galagan JE, Asai K, Machida M, Hall N, Barrell B, Denning DW. Nierman WC, et al. Among authors: asai k. Nature. 2005 Dec 22;438(7071):1151-6. doi: 10.1038/nature04332. Nature. 2005. PMID: 16372009
Genome sequencing and analysis of Aspergillus oryzae.
Machida M, Asai K, Sano M, Tanaka T, Kumagai T, Terai G, Kusumoto K, Arima T, Akita O, Kashiwagi Y, Abe K, Gomi K, Horiuchi H, Kitamoto K, Kobayashi T, Takeuchi M, Denning DW, Galagan JE, Nierman WC, Yu J, Archer DB, Bennett JW, Bhatnagar D, Cleveland TE, Fedorova ND, Gotoh O, Horikawa H, Hosoyama A, Ichinomiya M, Igarashi R, Iwashita K, Juvvadi PR, Kato M, Kato Y, Kin T, Kokubun A, Maeda H, Maeyama N, Maruyama J, Nagasaki H, Nakajima T, Oda K, Okada K, Paulsen I, Sakamoto K, Sawano T, Takahashi M, Takase K, Terabayashi Y, Wortman JR, Yamada O, Yamagata Y, Anazawa H, Hata Y, Koide Y, Komori T, Koyama Y, Minetoki T, Suharnan S, Tanaka A, Isono K, Kuhara S, Ogasawara N, Kikuchi H. Machida M, et al. Among authors: asai k. Nature. 2005 Dec 22;438(7071):1157-61. doi: 10.1038/nature04300. Nature. 2005. PMID: 16372010
Genomics of Aspergillus oryzae.
Kobayashi T, Abe K, Asai K, Gomi K, Juvvadi PR, Kato M, Kitamoto K, Takeuchi M, Machida M. Kobayashi T, et al. Among authors: asai k. Biosci Biotechnol Biochem. 2007 Mar;71(3):646-70. doi: 10.1271/bbb.60550. Epub 2007 Mar 7. Biosci Biotechnol Biochem. 2007. PMID: 17341818 Free article. Review.
MIDDAS-M: motif-independent de novo detection of secondary metabolite gene clusters through the integration of genome sequencing and transcriptome data.
Umemura M, Koike H, Nagano N, Ishii T, Kawano J, Yamane N, Kozone I, Horimoto K, Shin-ya K, Asai K, Yu J, Bennett JW, Machida M. Umemura M, et al. Among authors: asai k. PLoS One. 2013 Dec 31;8(12):e84028. doi: 10.1371/journal.pone.0084028. eCollection 2013. PLoS One. 2013. PMID: 24391870 Free PMC article.
Hybrid De Novo Genome Assembly Using MiSeq and SOLiD Short Read Data.
Ikegami T, Inatsugi T, Kojima I, Umemura M, Hagiwara H, Machida M, Asai K. Ikegami T, et al. Among authors: asai k. PLoS One. 2015 Apr 28;10(4):e0126289. doi: 10.1371/journal.pone.0126289. eCollection 2015. PLoS One. 2015. PMID: 25919614 Free PMC article.
1,320 results