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Delineating biological and technical variance in single cell expression data.
Int J Biochem Cell Biol. 2017 Sep;90:161-166. doi: 10.1016/j.biocel.2017.07.006. Epub 2017 Jul 15.
Int J Biochem Cell Biol. 2017.
PMID: 28716546
Free PMC article.
Review.
Single-cell RNAseq for the study of isoforms-how is that possible?
Arzalluz-Luque Á, Conesa A.
Arzalluz-Luque Á, et al.
Genome Biol. 2018 Aug 10;19(1):110. doi: 10.1186/s13059-018-1496-z.
Genome Biol. 2018.
PMID: 30097058
Free PMC article.
Review.
Item in Clipboard
tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing.
de la Fuente L, Arzalluz-Luque Á, Tardáguila M, Del Risco H, Martí C, Tarazona S, Salguero P, Scott R, Lerma A, Alastrue-Agudo A, Bonilla P, Newman JRB, Kosugi S, McIntyre LM, Moreno-Manzano V, Conesa A.
de la Fuente L, et al. Among authors: arzalluz luque a.
Genome Biol. 2020 May 18;21(1):119. doi: 10.1186/s13059-020-02028-w.
Genome Biol. 2020.
PMID: 32423416
Free PMC article.
Item in Clipboard
acorde unravels functionally interpretable networks of isoform co-usage from single cell data.
Arzalluz-Luque A, Salguero P, Tarazona S, Conesa A.
Arzalluz-Luque A, et al.
Nat Commun. 2022 Apr 5;13(1):1828. doi: 10.1038/s41467-022-29497-w.
Nat Commun. 2022.
PMID: 35383181
Free PMC article.
Item in Clipboard
Mutant PRPF8 Causes Widespread Splicing Changes in Spliceosome Components in Retinitis Pigmentosa Patient iPSC-Derived RPE Cells.
Arzalluz-Luque Á, Cabrera JL, Skottman H, Benguria A, Bolinches-Amorós A, Cuenca N, Lupo V, Dopazo A, Tarazona S, Delás B, Carballo M, Pascual B, Hernan I, Erceg S, Lukovic D.
Arzalluz-Luque Á, et al.
Front Neurosci. 2021 Apr 29;15:636969. doi: 10.3389/fnins.2021.636969. eCollection 2021.
Front Neurosci. 2021.
PMID: 33994920
Free PMC article.
Item in Clipboard
SQANTI3: curation of long-read transcriptomes for accurate identification of known and novel isoforms.
Pardo-Palacios FJ, Arzalluz-Luque A, Kondratova L, Salguero P, Mestre-Tomás J, Amorín R, Estevan-Morió E, Liu T, Nanni A, McIntyre L, Tseng E, Conesa A.
Pardo-Palacios FJ, et al. Among authors: arzalluz luque a.
Nat Methods. 2024 May;21(5):793-797. doi: 10.1038/s41592-024-02229-2. Epub 2024 Mar 20.
Nat Methods. 2024.
PMID: 38509328
Free PMC article.
Item in Clipboard
SQANTI3: curation of long-read transcriptomes for accurate identification of known and novel isoforms.
Pardo-Palacios FJ, Arzalluz-Luque A, Kondratova L, Salguero P, Mestre-Tomás J, Amorín R, Estevan-Morió E, Liu T, Nanni A, McIntyre L, Tseng E, Conesa A.
Pardo-Palacios FJ, et al. Among authors: arzalluz luque a.
bioRxiv [Preprint]. 2023 Jun 3:2023.05.17.541248. doi: 10.1101/2023.05.17.541248.
bioRxiv. 2023.
PMID: 37398077
Free PMC article.
Updated.
Preprint.
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Undisclosed, unmet and neglected challenges in multi-omics studies.
Tarazona S, Arzalluz-Luque A, Conesa A.
Tarazona S, et al. Among authors: arzalluz luque a.
Nat Comput Sci. 2021 Jun;1(6):395-402. doi: 10.1038/s43588-021-00086-z. Epub 2021 Jun 21.
Nat Comput Sci. 2021.
PMID: 38217236
Review.
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