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Metagenome-assembled genome extraction and analysis from microbiomes using KBase.
Chivian D, Jungbluth SP, Dehal PS, Wood-Charlson EM, Canon RS, Allen BH, Clark MM, Gu T, Land ML, Price GA, Riehl WJ, Sneddon MW, Sutormin R, Zhang Q, Cottingham RW, Henry CS, Arkin AP. Chivian D, et al. Among authors: arkin ap. Nat Protoc. 2023 Jan;18(1):208-238. doi: 10.1038/s41596-022-00747-x. Epub 2022 Nov 14. Nat Protoc. 2023. PMID: 36376589 Review.
Genomics for environmental microbiology.
Deutschbauer AM, Chivian D, Arkin AP. Deutschbauer AM, et al. Among authors: arkin ap. Curr Opin Biotechnol. 2006 Jun;17(3):229-35. doi: 10.1016/j.copbio.2006.04.003. Epub 2006 May 2. Curr Opin Biotechnol. 2006. PMID: 16650754 Review.
Environmental genomics reveals a single-species ecosystem deep within Earth.
Chivian D, Brodie EL, Alm EJ, Culley DE, Dehal PS, DeSantis TZ, Gihring TM, Lapidus A, Lin LH, Lowry SR, Moser DP, Richardson PM, Southam G, Wanger G, Pratt LM, Andersen GL, Hazen TC, Brockman FJ, Arkin AP, Onstott TC. Chivian D, et al. Among authors: arkin ap. Science. 2008 Oct 10;322(5899):275-8. doi: 10.1126/science.1155495. Science. 2008. PMID: 18845759
FastBLAST: homology relationships for millions of proteins.
Price MN, Dehal PS, Arkin AP. Price MN, et al. Among authors: arkin ap. PLoS One. 2008;3(10):e3589. doi: 10.1371/journal.pone.0003589. Epub 2008 Oct 31. PLoS One. 2008. PMID: 18974889 Free PMC article.
336 results