Arita M - Search Results

1

MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis.

Tsugawa H, Cajka T, Kind T, Ma Y, Higgins B, Ikeda K, Kanazawa M, VanderGheynst J, Fiehn O, Arita M. Tsugawa H, et al. Among authors: arita m. Nat Methods. 2015 Jun;12(6):523-6. doi: 10.1038/nmeth.3393. Epub 2015 May 4. Nat Methods. 2015. PMID: 25938372 Free PMC article.

2

GC/MS based metabolomics: development of a data mining system for metabolite identification by using soft independent modeling of class analogy (SIMCA).

Tsugawa H, Tsujimoto Y, Arita M, Bamba T, Fukusaki E. Tsugawa H, et al. Among authors: arita m. BMC Bioinformatics. 2011 May 4;12:131. doi: 10.1186/1471-2105-12-131. BMC Bioinformatics. 2011. PMID: 21542920 Free PMC article.

3

MRMPROBS: a data assessment and metabolite identification tool for large-scale multiple reaction monitoring based widely targeted metabolomics.

Tsugawa H, Arita M, Kanazawa M, Ogiwara A, Bamba T, Fukusaki E. Tsugawa H, et al. Among authors: arita m. Anal Chem. 2013 May 21;85(10):5191-9. doi: 10.1021/ac400515s. Epub 2013 May 1. Anal Chem. 2013. PMID: 23581547

4

MRMPROBS suite for metabolomics using large-scale MRM assays.

Tsugawa H, Kanazawa M, Ogiwara A, Arita M. Tsugawa H, et al. Among authors: arita m. Bioinformatics. 2014 Aug 15;30(16):2379-80. doi: 10.1093/bioinformatics/btu203. Epub 2014 Apr 20. Bioinformatics. 2014. PMID: 24753485

5

Exploration of polar lipid accumulation profiles in Euglena gracilis using LipidBlast, an MS/MS spectral library constructed in silico.

Ogawa T, Furuhashi T, Okazawa A, Nakai R, Nakazawa M, Kind T, Fiehn O, Kanaya S, Arita M, Ohta D. Ogawa T, et al. Among authors: arita m. Biosci Biotechnol Biochem. 2014;78(1):14-8. doi: 10.1080/09168451.2014.877826. Epub 2014 Apr 10. Biosci Biotechnol Biochem. 2014. PMID: 25036478

6

MRM-DIFF: data processing strategy for differential analysis in large scale MRM-based lipidomics studies.

Tsugawa H, Ohta E, Izumi Y, Ogiwara A, Yukihira D, Bamba T, Fukusaki E, Arita M. Tsugawa H, et al. Among authors: arita m. Front Genet. 2015 Jan 30;5:471. doi: 10.3389/fgene.2014.00471. eCollection 2014. Front Genet. 2015. PMID: 25688256 Free PMC article.

7

Hydrogen Rearrangement Rules: Computational MS/MS Fragmentation and Structure Elucidation Using MS-FINDER Software.

Tsugawa H, Kind T, Nakabayashi R, Yukihira D, Tanaka W, Cajka T, Saito K, Fiehn O, Arita M. Tsugawa H, et al. Among authors: arita m. Anal Chem. 2016 Aug 16;88(16):7946-58. doi: 10.1021/acs.analchem.6b00770. Epub 2016 Aug 4. Anal Chem. 2016. PMID: 27419259 Free PMC article.

8

SPLASH, a hashed identifier for mass spectra.

Wohlgemuth G, Mehta SS, Mejia RF, Neumann S, Pedrosa D, Pluskal T, Schymanski EL, Willighagen EL, Wilson M, Wishart DS, Arita M, Dorrestein PC, Bandeira N, Wang M, Schulze T, Salek RM, Steinbeck C, Nainala VC, Mistrik R, Nishioka T, Fiehn O. Wohlgemuth G, et al. Among authors: arita m. Nat Biotechnol. 2016 Nov 8;34(11):1099-1101. doi: 10.1038/nbt.3689. Nat Biotechnol. 2016. PMID: 27824832 Free PMC article. No abstract available.

9

Comprehensive identification of sphingolipid species by in silico retention time and tandem mass spectral library.

Tsugawa H, Ikeda K, Tanaka W, Senoo Y, Arita M, Arita M. Tsugawa H, et al. Among authors: arita m. J Cheminform. 2017 Mar 15;9:19. doi: 10.1186/s13321-017-0205-3. eCollection 2017. J Cheminform. 2017. PMID: 28316657 Free PMC article.

10

Identification of small molecules using accurate mass MS/MS search.

Kind T, Tsugawa H, Cajka T, Ma Y, Lai Z, Mehta SS, Wohlgemuth G, Barupal DK, Showalter MR, Arita M, Fiehn O. Kind T, et al. Among authors: arita m. Mass Spectrom Rev. 2018 Jul;37(4):513-532. doi: 10.1002/mas.21535. Epub 2017 Apr 24. Mass Spectrom Rev. 2018. PMID: 28436590 Free PMC article. Review.

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