Arita K - Search Results

1

Structural dynamics of double-stranded DNA with epigenome modification.

Furukawa A, Walinda E, Arita K, Sugase K. Furukawa A, et al. Among authors: arita k. Nucleic Acids Res. 2021 Jan 25;49(2):1152-1162. doi: 10.1093/nar/gkaa1210. Nucleic Acids Res. 2021. PMID: 33337470 Free PMC article.

2

Structural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4.

Otani J, Arita K, Kato T, Kinoshita M, Kimura H, Suetake I, Tajima S, Ariyoshi M, Shirakawa M. Otani J, et al. Among authors: arita k. J Biol Chem. 2013 Mar 1;288(9):6351-62. doi: 10.1074/jbc.M112.431098. Epub 2013 Jan 10. J Biol Chem. 2013. PMID: 23316048 Free PMC article.

3

The unexpected role of polyubiquitin chains in the formation of fibrillar aggregates.

Morimoto D, Walinda E, Fukada H, Sou YS, Kageyama S, Hoshino M, Fujii T, Tsuchiya H, Saeki Y, Arita K, Ariyoshi M, Tochio H, Iwai K, Namba K, Komatsu M, Tanaka K, Shirakawa M. Morimoto D, et al. Among authors: arita k. Nat Commun. 2015 Jan 20;6:6116. doi: 10.1038/ncomms7116. Nat Commun. 2015. PMID: 25600778 Free PMC article.

4

Structural basis for the unique multifaceted interaction of DPPA3 with the UHRF1 PHD finger.

Hata K, Kobayashi N, Sugimura K, Qin W, Haxholli D, Chiba Y, Yoshimi S, Hayashi G, Onoda H, Ikegami T, Mulholland CB, Nishiyama A, Nakanishi M, Leonhardt H, Konuma T, Arita K. Hata K, et al. Among authors: arita k. Nucleic Acids Res. 2022 Nov 28;50(21):12527-12542. doi: 10.1093/nar/gkac1082. Nucleic Acids Res. 2022. PMID: 36420895 Free PMC article.

5

Recognition of hemi-methylated DNA by the SRA protein UHRF1 by a base-flipping mechanism.

Arita K, Ariyoshi M, Tochio H, Nakamura Y, Shirakawa M. Arita K, et al. Nature. 2008 Oct 9;455(7214):818-21. doi: 10.1038/nature07249. Epub 2008 Sep 3. Nature. 2008. PMID: 18772891

6

Structural basis for recognition of H3K4 methylation status by the DNA methyltransferase 3A ATRX-DNMT3-DNMT3L domain.

Otani J, Nankumo T, Arita K, Inamoto S, Ariyoshi M, Shirakawa M. Otani J, et al. Among authors: arita k. EMBO Rep. 2009 Nov;10(11):1235-41. doi: 10.1038/embor.2009.218. Epub 2009 Oct 16. EMBO Rep. 2009. PMID: 19834512 Free PMC article.

7

Recognition of modification status on a histone H3 tail by linked histone reader modules of the epigenetic regulator UHRF1.

Arita K, Isogai S, Oda T, Unoki M, Sugita K, Sekiyama N, Kuwata K, Hamamoto R, Tochio H, Sato M, Ariyoshi M, Shirakawa M. Arita K, et al. Proc Natl Acad Sci U S A. 2012 Aug 7;109(32):12950-5. doi: 10.1073/pnas.1203701109. Epub 2012 Jul 25. Proc Natl Acad Sci U S A. 2012. PMID: 22837395 Free PMC article.

8

Preparation of the ubiquitination-triggered active form of SETDB1 in Escherichia coli for biochemical and structural analyses.

Funyu T, Kanemaru Y, Onoda H, Arita K. Funyu T, et al. Among authors: arita k. J Biochem. 2021 Dec 28;170(5):655-662. doi: 10.1093/jb/mvab087. J Biochem. 2021. PMID: 34324684

9

Structural basis for activation of DNMT1.

Kikuchi A, Onoda H, Yamaguchi K, Kori S, Matsuzawa S, Chiba Y, Tanimoto S, Yoshimi S, Sato H, Yamagata A, Shirouzu M, Adachi N, Sharif J, Koseki H, Nishiyama A, Nakanishi M, Defossez PA, Arita K. Kikuchi A, et al. Among authors: arita k. Nat Commun. 2022 Nov 21;13(1):7130. doi: 10.1038/s41467-022-34779-4. Nat Commun. 2022. PMID: 36414620 Free PMC article.

10

Quantitative comparison of protein dynamics in live cells and in vitro by in-cell (19)F-NMR.

Takaoka Y, Kioi Y, Morito A, Otani J, Arita K, Ashihara E, Ariyoshi M, Tochio H, Shirakawa M, Hamachi I. Takaoka Y, et al. Among authors: arita k. Chem Commun (Camb). 2013 Apr 7;49(27):2801-3. doi: 10.1039/c3cc39205h. Chem Commun (Camb). 2013. PMID: 23440262

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