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The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.
Genome Biol. 2019 Nov 19;20(1):244. doi: 10.1186/s13059-019-1835-8.
Genome Biol. 2019.
PMID: 31744546
Free PMC article.
GrAPFI: predicting enzymatic function of proteins from domain similarity graphs.
Sarker B, Ritchie DW, Aridhi S.
Sarker B, et al. Among authors: aridhi s.
BMC Bioinformatics. 2020 Apr 29;21(1):168. doi: 10.1186/s12859-020-3460-7.
BMC Bioinformatics. 2020.
PMID: 32349654
Free PMC article.
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Application of Artificial Intelligence to Gastroenterology and Hepatology.
Le Berre C, Sandborn WJ, Aridhi S, Devignes MD, Fournier L, Smaïl-Tabbone M, Danese S, Peyrin-Biroulet L.
Le Berre C, et al. Among authors: aridhi s.
Gastroenterology. 2020 Jan;158(1):76-94.e2. doi: 10.1053/j.gastro.2019.08.058. Epub 2019 Oct 5.
Gastroenterology. 2020.
PMID: 31593701
Review.
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Prediction of Ionizing Radiation Resistance in Bacteria Using a Multiple Instance Learning Model.
Aridhi S, Sghaier H, Zoghlami M, Maddouri M, Nguifo EM.
Aridhi S, et al.
J Comput Biol. 2016 Jan;23(1):10-20. doi: 10.1089/cmb.2015.0134. Epub 2015 Oct 20.
J Comput Biol. 2016.
PMID: 26484752
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Effects of trace element dietary supplements on voice parameters and some physiological and psychological parameters related to stress.
Soula M, Messas NI, Aridhi S, Urbinelli R, Guyon A.
Soula M, et al. Among authors: aridhi s.
Heliyon. 2024 Apr 4;10(8):e29127. doi: 10.1016/j.heliyon.2024.e29127. eCollection 2024 Apr 30.
Heliyon. 2024.
PMID: 38655294
Free PMC article.
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Molecular-evaluated and explainable drug repurposing for COVID-19 using ensemble knowledge graph embedding.
Islam MK, Amaya-Ramirez D, Maigret B, Devignes MD, Aridhi S, Smaïl-Tabbone M.
Islam MK, et al. Among authors: aridhi s.
Sci Rep. 2023 Mar 4;13(1):3643. doi: 10.1038/s41598-023-30095-z.
Sci Rep. 2023.
PMID: 36871056
Free PMC article.
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Improving automatic GO annotation with semantic similarity.
Sarker B, Khare N, Devignes MD, Aridhi S.
Sarker B, et al. Among authors: aridhi s.
BMC Bioinformatics. 2022 Dec 12;23(Suppl 2):433. doi: 10.1186/s12859-022-04958-7.
BMC Bioinformatics. 2022.
PMID: 36510133
Free PMC article.
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