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Viral variant-resolved wastewater surveillance of SARS-CoV-2 at national scale.
Amman F, Markt R, Endler L, Hupfauf S, Agerer B, Schedl A, Richter L, Zechmeister M, Bicher M, Heiler G, Triska P, Thornton M, Penz T, Senekowitsch M, Laine J, Keszei Z, Klimek P, Nägele F, Mayr M, Daleiden B, Steinlechner M, Niederstätter H, Heidinger P, Rauch W, Scheffknecht C, Vogl G, Weichlinger G, Wagner AO, Slipko K, Masseron A, Radu E, Allerberger F, Popper N, Bock C, Schmid D, Oberacher H, Kreuzinger N, Insam H, Bergthaler A. Amman F, et al. Nat Biotechnol. 2022 Dec;40(12):1814-1822. doi: 10.1038/s41587-022-01387-y. Epub 2022 Jul 18. Nat Biotechnol. 2022. PMID: 35851376
Dual RNA-seq unveils noncoding RNA functions in host-pathogen interactions.
Westermann AJ, Förstner KU, Amman F, Barquist L, Chao Y, Schulte LN, Müller L, Reinhardt R, Stadler PF, Vogel J. Westermann AJ, et al. Among authors: amman f. Nature. 2016 Jan 28;529(7587):496-501. doi: 10.1038/nature16547. Epub 2016 Jan 20. Nature. 2016. PMID: 26789254
Fast accessibility-based prediction of RNA-RNA interactions.
Tafer H, Amman F, Eggenhofer F, Stadler PF, Hofacker IL. Tafer H, et al. Among authors: amman f. Bioinformatics. 2011 Jul 15;27(14):1934-40. doi: 10.1093/bioinformatics/btr281. Epub 2011 May 18. Bioinformatics. 2011. PMID: 21593134
Bioinformatics of prokaryotic RNAs.
Backofen R, Amman F, Costa F, Findeiß S, Richter AS, Stadler PF. Backofen R, et al. Among authors: amman f. RNA Biol. 2014;11(5):470-83. doi: 10.4161/rna.28647. Epub 2014 Apr 2. RNA Biol. 2014. PMID: 24755880 Free PMC article. Review.
TSSAR: TSS annotation regime for dRNA-seq data.
Amman F, Wolfinger MT, Lorenz R, Hofacker IL, Stadler PF, Findeiß S. Amman F, et al. BMC Bioinformatics. 2014 Mar 27;15:89. doi: 10.1186/1471-2105-15-89. BMC Bioinformatics. 2014. PMID: 24674136 Free PMC article.
Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells.
Hölzer M, Krähling V, Amman F, Barth E, Bernhart SH, Carmelo VA, Collatz M, Doose G, Eggenhofer F, Ewald J, Fallmann J, Feldhahn LM, Fricke M, Gebauer J, Gruber AJ, Hufsky F, Indrischek H, Kanton S, Linde J, Mostajo N, Ochsenreiter R, Riege K, Rivarola-Duarte L, Sahyoun AH, Saunders SJ, Seemann SE, Tanzer A, Vogel B, Wehner S, Wolfinger MT, Backofen R, Gorodkin J, Grosse I, Hofacker I, Hoffmann S, Kaleta C, Stadler PF, Becker S, Marz M. Hölzer M, et al. Among authors: amman f. Sci Rep. 2016 Oct 7;6:34589. doi: 10.1038/srep34589. Sci Rep. 2016. PMID: 27713552 Free PMC article.
Accurate mapping of tRNA reads.
Hoffmann A, Fallmann J, Vilardo E, Mörl M, Stadler PF, Amman F. Hoffmann A, et al. Among authors: amman f. Bioinformatics. 2018 Apr 1;34(7):1116-1124. doi: 10.1093/bioinformatics/btx756. Bioinformatics. 2018. PMID: 29228294
Identification of RNA 3´ ends and termination sites in Haloferax volcanii.
Berkemer SJ, Maier LK, Amman F, Bernhart SH, Wörtz J, Märkle P, Pfeiffer F, Stadler PF, Marchfelder A. Berkemer SJ, et al. Among authors: amman f. RNA Biol. 2020 May;17(5):663-676. doi: 10.1080/15476286.2020.1723328. Epub 2020 Feb 10. RNA Biol. 2020. PMID: 32041469 Free PMC article.
51 results